当前解析结果
SmilChr01G000088| 统一新 Gene ID | SmilChr01G000088 |
|---|---|
| 名称 | SmilChr01G000088 |
| 描述 | uncharacterized SmilChr01G000088 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 1619640 - 1629982 / - |
| NCBI Gene ID | LOC131007226 |
|---|---|
| GeneID | 131007226 |
| locus_tag | - |
| NCBI Name | LOC131007226 |
| 原始查询 | SmilChr01G000088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0315200; species=rice; confidence=medium |
| 产物 | hit=Os08g0315200; species=rice; confidence=medium |
| Arabidopsis | -- |
| Rice | Os08g0315200- identity=35.1; qcov=0.475; evalue=2.41e-27; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007226 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057790360.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057790360.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057790360.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057790360.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057790360.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:1624073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,C53 |
Chr1:1624082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr1:1624184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr1:1624343 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C71 |
Chr1:1624343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:1624375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B76,C40,C71,D6 |
Chr1:1624402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,A23,C22 |
Chr1:1624405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C49 |
Chr1:1624422 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B21,C8,D10 |
Chr1:1624449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C64,D10 |
Chr1:1624510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C20 |
Chr1:1624515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790360.1PF19259
Ty3_capsid 49-212 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 310-325 aa
XP_057790361.1PF19259
Ty3_capsid 49-212 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 310-325 aa
XP_057790362.1PF19259
Ty3_capsid 49-212 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 310-325 aa
XP_057790364.1PF19259
Ty3_capsid 49-212 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 310-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790360.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 212 | 1.6e-08 | 34.9 | Ty3 transposon capsid-like protein |
XP_057790360.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 5.5e-14 | 53.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057790360.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 310 | 325 | 1.2e-05 | 25.9 | Zinc knuckle |
XP_057790361.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 212 | 1.6e-08 | 34.9 | Ty3 transposon capsid-like protein |
XP_057790361.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 5.5e-14 | 53.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057790361.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 310 | 325 | 1.2e-05 | 25.9 | Zinc knuckle |
XP_057790362.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 212 | 1.6e-08 | 34.9 | Ty3 transposon capsid-like protein |
XP_057790362.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 5.5e-14 | 53.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057790362.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 310 | 325 | 1.2e-05 | 25.9 | Zinc knuckle |
XP_057790364.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 212 | 1.6e-08 | 34.9 | Ty3 transposon capsid-like protein |
XP_057790364.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 5.5e-14 | 53.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057790364.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 310 | 325 | 1.2e-05 | 25.9 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
9 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。