当前解析结果
SmilChr01G000144| 统一新 Gene ID | SmilChr01G000144 |
|---|---|
| 名称 | SmilChr01G000144 |
| 描述 | ubiquitin-40S ribosomal protein S27a |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 2432032 - 2432941 / - |
| NCBI Gene ID | LOC131007264 |
|---|---|
| GeneID | 131007264 |
| locus_tag | - |
| NCBI Name | LOC131007264 |
| 原始查询 | SmilChr01G000144 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin-40S ribosomal protein S27a |
| 产物 | ubiquitin-40S ribosomal protein S27a |
| Arabidopsis | AT2G47110 (UBQ6)ubiquitin 6 [Source:NCBI gene (formerly Entrezgene);Acc:819323] identity=96.7; qcov=0.974; evalue=1.92e-106; confidence=high |
| Rice | Os01g0328400 (RPS27a)- identity=95.5; qcov=0.994; evalue=4.17e-106; confidence=high |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00240 (ubiquitin); PF01599 (Ribosomal_S27); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007264 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790401.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057790401.1 |
| 3 | Nucleoplasm | 核质 | 0.80000 | XP_057790401.1 |
| 4 | Nucleus | 细胞核 | 0.60000 | XP_057790401.1 |
| 5 | Nucleolus | 核仁 | 0.20000 | XP_057790401.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:2432179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B33,B98,C14 |
Chr1:2432341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C23 |
Chr1:2432427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B106,B61,C49,D10 |
Chr1:2432484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:2432587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B24,B55,B68,C85 |
Chr1:2432596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,C8,D6 |
Chr1:2432620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790401.1PF11976
Rad60-SLD 1-71 aa
PF00240
ubiquitin 3-74 aa
PF14560
Ubiquitin_2 11-69 aa
PF01599
Ribosomal_S27 102-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790401.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 1 | 71 | 1.7e-17 | 63.6 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057790401.1 |
Pfam | PF00240 |
ubiquitin | Domain | 3 | 74 | 1.2e-32 | 112.2 | Ubiquitin family |
XP_057790401.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 11 | 69 | 3.7e-05 | 24.8 | Ubiquitin-like domain |
XP_057790401.1 |
Pfam | PF01599 |
Ribosomal_S27 | Domain | 102 | 149 | 3.1e-27 | 94.7 | Ribosomal protein S27a |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。