Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000163

染色体: Chr01 坐标: 2703580-2706414 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000163
名称SmilChr01G000163
描述exocyst complex component SEC15B
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向2703580 - 2706414 / -

ID 对照

NCBI Gene IDLOC131007277
GeneID131007277
locus_tag-
NCBI NameLOC131007277
原始查询SmilChr01G000163

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述exocyst complex component SEC15B
产物exocyst complex component SEC15B
ArabidopsisAT4G02350 (SEC15B)
exocyst complex component sec15B [Source:NCBI gene (formerly Entrezgene);Acc:828060]
identity=72.4; qcov=1; evalue=0; confidence=high
RiceOs01g0351300
-
identity=59.4; qcov=0.983; evalue=0; confidence=high
GOGO:0000145 (exocyst); GO:0006886 (intracellular protein transport); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport); GO:0016020 (membrane); GO:0090522 (GO:0090522)
KEGG-
PfamPF04091 (Sec15_C); PF20651 (EXOC6_Sec15_N)
InterPro-
eggNOG-
NRGeneID:131007277

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057790407.1
2 Trans-golgi network Trans-golgi network 1.00000 XP_057790407.1
3 Clathrin-coated vesicle Clathrin-coated vesicle 0.60000 XP_057790407.1
4 Cytosol 细胞质基质 0.60000 XP_057790407.1
5 Vesicle 囊泡 0.60000 XP_057790407.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:2703806 G A EMS_canonical_SNV CDS_variant 4 B138,B33,B98,C14
Chr1:2704493 G A EMS_canonical_SNV CDS_variant 2 B104,B76
Chr1:2705054 C T EMS_canonical_SNV CDS_variant 3 B104,B76,D10
Chr1:2705098 G A EMS_canonical_SNV CDS_variant 3 B21,B91,C57
Chr1:2705393 C T EMS_canonical_SNV CDS_variant 3 B104,B76,D10
Chr1:2705500 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:2705687 G A EMS_canonical_SNV CDS_variant 1 B139
Chr1:2705690 G A EMS_canonical_SNV CDS_variant 1 C48
Chr1:2705886 G A EMS_canonical_SNV CDS_variant 1 B97
Chr1:2706154 G A EMS_canonical_SNV CDS_variant 3 B63,C19,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790407.1
800 aa
N
1
400
800
EXOC6_Sec15_N
Sec15_C
C
PF20651 EXOC6_Sec15_N 57-226 aa PF04091 Sec15_C 417-763 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790407.1 Pfam PF20651 EXOC6_Sec15_N Repeat 57 226 6.9e-47 160.3 Exocyst complex component EXOC6/Sec15, N-terminal
XP_057790407.1 Pfam PF04091 Sec15_C Repeat 417 763 7.1e-94 315.7 Exocyst complex subunit Sec15 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934424.1
AATATGAAATATTAAAAAATGAAGGATAAAGAAGAAAGAAATTCCGAACAACTCGATGGCAGCGGAGTCAAAAGTCAATACACGAAATCCGAGTGGCATATGAGTCAATTTACATATCTCAAGTTTCCATTTCCCCCAAATCCAATATTACAAGCAGATGCAGATGCAAATGCATTTTCTATAAAATCCTCTCCGAGTTTAACGGCTCCGTCACATTAGCAGTTACTGTCAGAAGAGAAACCATGAATACCATCACCACC...

CDS

1 records

下载 CDS FASTA
LOC131007277
ATGAATACCATCACCACCCGCCGGAAAGTAGTTCCGGCGGCTGAGAACGGCGACACTGCCGATAAGCAGGACCAGCTACTCCTCTCCGCCGCCATATGCAACGGCGAAGACCTCGGCTCATTCGTCCGAAAAGTCTTCGCCTCCGGCAAGCCGGAAACCCTACTCCTCCACCTCAAGCGCTTCTCCAAATCGAAGGAATCGGAGATCGAGGACGTGTGCCGCGCTCACTACCAGGACTTCATCACCGCCGTCGACGATCT...

Protein

1 records

下载 Protein FASTA
XP_057790407.1
MNTITTRRKVVPAAENGDTADKQDQLLLSAAICNGEDLGSFVRKVFASGKPETLLLHLKRFSKSKESEIEDVCRAHYQDFITAVDDLRSLLSDVDSLKSSLSNSNSQLQNVAVPLLTSLDSYVEARNKCANITLAINSLNTCVRLMELCSRANSHLAENNFYLALRCLDSIETDFQDQVPSTTLKRMVEKQIPAIRAHIERQVNKEFGDWLVEIRTVSRNLGQLAIGQASAGRQREEELRMKQRQAEEQSRLSLRDCVYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器