Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000202

染色体: Chr01 坐标: 3470653-3475023 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000202
名称SmilChr01G000202
描述ethylene response sensor 1-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向3470653 - 3475023 / -

ID 对照

NCBI Gene IDLOC131007303
GeneID131007303
locus_tag-
NCBI NameLOC131007303
原始查询SmilChr01G000202

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ethylene response sensor 1-like
产物ethylene response sensor 1-like
ArabidopsisAT2G40940 (ERS1)
ethylene response sensor 1 [Source:NCBI gene (formerly Entrezgene);Acc:818693]
identity=70.8; qcov=0.943; evalue=0; confidence=high
RiceOs03g0701700 (OS-ERS1)
-
identity=71.3; qcov=0.935; evalue=0; confidence=high
GOGO:0000155 (phosphorelay sensor kinase activity); GO:0005515 (protein binding); GO:0005783 (endoplasmic reticulum); GO:0007165 (signal transduction); GO:0016310 (phosphorylation); GO:0038199 (ethylene receptor activity); GO:0051740 (ethylene binding)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
PfamPF00512 (HisKA); PF01590 (GAF); PF02518 (HATPase_c); PF25487 (ETR1_N)
InterPro-
eggNOG-
NRGeneID:131007303

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057790427.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057790427.1
3 Nucleus 细胞核 0.00000 XP_057790427.1
4 Chromosome 染色体 0.00000 XP_057790427.1
5 Centromere 着丝粒 0.00000 XP_057790427.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:3470851 CT C 1bp_deletion frameshift_variant 57 A1,A11,A18,A25,A4,A5,A9,B1,B10,B103,B105,B106,B107,B112,B118,B121,B123,B124,B131,B25,B31,B35,B37,B38,B39,B47,B49,B50,B52,B59,B61,B77,B8,B80,B81,B90,B92,C10,C23,C3,C30,C31,C43,C48,C49,C53,C54,C60,C73,C74,C80,C87,D10,D11,D3,D7,D8
Chr1:3470853 T TC 1bp_insertion frameshift_variant 58 A1,A11,A18,A25,A4,A5,A9,B1,B10,B103,B105,B106,B107,B112,B118,B121,B123,B124,B131,B25,B31,B35,B37,B38,B39,B47,B49,B50,B52,B59,B61,B77,B8,B80,B81,B90,B92,C10,C23,C26,C3,C30,C31,C43,C48,C49,C53,C54,C60,C73,C74,C80,C87,D10,D11,D3,D7,D8
Chr1:3470899 G A EMS_canonical_SNV CDS_variant 1 C26
Chr1:3471782 G A EMS_canonical_SNV CDS_variant 1 C55
Chr1:3472009 G A EMS_canonical_SNV CDS_variant 1 B99
Chr1:3472093 G A EMS_canonical_SNV CDS_variant 4 B36,C51,C6,C77
Chr1:3472803 G A EMS_canonical_SNV CDS_variant 1 B103
Chr1:3473450 G A EMS_canonical_SNV CDS_variant 1 B82
Chr1:3473502 A AG 1bp_insertion frameshift_variant 44 A23,B101,B102,B104,B109,B119,B120,B124,B125,B127,B140,B22,B24,B26,B53,B58,B6,B67,B68,B69,B78,B83,B86,B90,B92,C12,C14,C17,C2,C26,C29,C41,C44,C57,C59,C64,C66,C67,C70,C76,C77,C79,C85,D3
Chr1:3473504 GA G 1bp_deletion frameshift_variant 44 A23,B101,B102,B104,B109,B119,B120,B124,B125,B127,B140,B22,B24,B26,B53,B58,B6,B67,B68,B69,B78,B83,B86,B90,B92,C12,C14,C17,C2,C26,C29,C41,C44,C57,C59,C64,C66,C67,C70,C76,C77,C79,C85,D3
Chr1:3473594 G A EMS_canonical_SNV CDS_variant 2 B138,B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790427.1
633 aa
N
1
316
633
ETR1_N
GAF
HisKA
HATPase_c
C
PF25487 ETR1_N 17-115 aa PF01590 GAF 158-305 aa PF00512 HisKA 341-406 aa PF02518 HATPase_c 453-583 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790427.1 Pfam PF25487 ETR1_N Domain 17 115 1.9e-38 131.8 Ethylene receptor 1-like, N-terminal domain
XP_057790427.1 Pfam PF01590 GAF Domain 158 305 1.8e-14 55.2 GAF domain
XP_057790427.1 Pfam PF00512 HisKA Domain 341 406 1.8e-18 67.1 His Kinase A (phospho-acceptor) domain
XP_057790427.1 Pfam PF02518 HATPase_c Domain 453 583 6.5e-24 85.2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934444.1
TTACTTCATCACTTTTTAATGAGCTCAACTCTCACTCCTATTTATGTTCTCCTCAAACGATCCAACCATTTTTCCTTTCCCAGAATGAAACTCCGCAGGATTCGTCCAAGTGAATCAGTCCGCGGAGTGATGTTCTAGGATTCGCGTGATGTGATTTTAATTATAAGGTTCCTCTAATGGAGTCATGCGACTGCGTTGAGAGCCACTGGCCAGCTGATGGAATCCTGGTGAAATATCAATACATATCAGATTTTCTCATC...

CDS

1 records

下载 CDS FASTA
LOC131007303
ATGGAGTCATGCGACTGCGTTGAGAGCCACTGGCCAGCTGATGGAATCCTGGTGAAATATCAATACATATCAGATTTTCTCATCGCAATTGCATACTTCTCTATTCCTCTGGAGCTCATTTACTTTGTTCAGAAATCTTCATTCTTTCCATATAGATGGGTGCTGATACAGTTTGGTGCTTTCATCATTCTCTGTGGAGCAACTCATCTAATTAATCTGTGGACATTCACTCTTCACTCGAAAACTGTTGCAGTGGTAAT...

Protein

1 records

下载 Protein FASTA
XP_057790427.1
MESCDCVESHWPADGILVKYQYISDFLIAIAYFSIPLELIYFVQKSSFFPYRWVLIQFGAFIILCGATHLINLWTFTLHSKTVAVVMTIAKVSTAVVSCVTALMLVHIIPDLLSVKTRESFLKNKAEELDREMGLIIKQEETSRHVRMLTHEIRSTLDRHTILRTTLVELGRTLDLEECALWMPSQRGLNLQLSHTLSNLIPVGSTVPTSLPIVNEVFSRAEAIHIPHTCPLANIKPVPGRYMSPESVAVRVPLLDLSNF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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