Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000208

染色体: Chr01 坐标: 3616537-3623070 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000208
名称SmilChr01G000208
描述kinesin-like protein KIN-14I
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向3616537 - 3623070 / -

ID 对照

NCBI Gene IDLOC131007308
GeneID131007308
locus_tag-
NCBI NameLOC131007308
原始查询SmilChr01G000208

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-14I
产物kinesin-like protein KIN-14I
ArabidopsisAT2G47500 (AT2G47500)
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819363]
identity=63.9; qcov=0.986; evalue=0; confidence=high
RiceOs12g0547500 (OsKCH1)
-
identity=54.6; qcov=0.989; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGG-
PfamPF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131007308

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057790432.1
2 Phragmoplast Phragmoplast 1.00000 XP_057790432.1
3 Cytosol 细胞质基质 0.60000 XP_057790432.1
4 Spindle Spindle 0.40000 XP_057790432.1
5 Nucleus 细胞核 0.00000 XP_057790432.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:3616998 G A EMS_canonical_SNV CDS_variant 2 B138,B55
Chr1:3617194 C T EMS_canonical_SNV CDS_variant 5 B49,B50,B56,B74,B96
Chr1:3617284 C T EMS_canonical_SNV CDS_variant 1 C82
Chr1:3617404 C T EMS_canonical_SNV CDS_variant 2 B138,B55
Chr1:3617446 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:3617492 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:3617912 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:3617970 G A EMS_canonical_SNV CDS_variant 3 B125,B90,B92
Chr1:3618206 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:3618288 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:3618835 G A EMS_canonical_SNV CDS_variant 2 B35,B83
Chr1:3619169 C T EMS_canonical_SNV CDS_variant 1 C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790432.1
991 aa
N
1
496
991
CH
Microtub_bd
Kinesin
C
PF00307 CH 45-162 aa PF16796 Microtub_bd 374-532 aa PF00225 Kinesin 394-712 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790432.1 Pfam PF00307 CH Domain 45 162 3.4e-11 44.0 Calponin homology (CH) domain
XP_057790432.1 Pfam PF16796 Microtub_bd Domain 374 532 5.3e-45 153.8 Microtubule binding
XP_057790432.1 Pfam PF00225 Kinesin Domain 394 712 5.3e-110 368.2 Kinesin motor domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934449.1
TTAAGAGATAGAGAGAGAGAAAAGGCGAGGAAGCCATGACCGAATGCCTACTCACAACTGTGGTGTTGTTGTAGAGTGAGATAAAAGCTACCGATTATTTTCCCTATATTAATTACTCCGAAGCTCAATCGATTTGTTTGTTTTGTGGATGTTTCGGTTCGTGTTGAATTGAGAAATTGAGATTTTTCGGTTAGCTTGTATTGGAAGGAATTGAGAATGGCGGCGGCTGAAGGTTATTCGTTCTCGGTGGCATCAGTTGT...

CDS

1 records

下载 CDS FASTA
LOC131007308
ATGGCGGCGGCTGAAGGTTATTCGTTCTCGGTGGCATCAGTTGTGGAGGATGTTCTCCAGCAACACGAGAATCGATCCCGCGATCTCGATTTCGATGCTCGCAGGGCAGAAGAAGCCGCAATCAGAAGATTTGAAGCTGCGGCGTGGCTGAGAAAAGTGGTTGGAGTAGTTGGTGCTAGAGACTTACCAGCAGAGCCTTCCGAGGAAGAATTTAGGCTCGGATTAAGAAGTGGGATAATTCTCTGCAATGTACTCAATAG...

Protein

1 records

下载 Protein FASTA
XP_057790432.1
MAAAEGYSFSVASVVEDVLQQHENRSRDLDFDARRAEEAAIRRFEAAAWLRKVVGVVGARDLPAEPSEEEFRLGLRSGIILCNVLNRIQQGAVLKVVESPCDAALIPDGAALSAYQYFENVRNFLVAVQERGIPTFEASDLEQGGKSSRIVNCVLALKSYYEWKQSGGNGVWKFGGNVKPATSGKQFVRKNSEPFMSSLSRSSSANEKLLNGVHRDIKDNNKVPSSSLSKLVRAILLDKKPEEVPNLVESVLSKVMEEFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器