Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000255`

染色体: Chr01 坐标: 4888725-4895148 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000255`
名称	SmilChr01G000255
描述	uncharacterized SmilChr01G000255
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	4888725 - 4895148 / `+`

ID 对照

NCBI Gene ID	`LOC131015628`
GeneID	`131015628`
locus_tag	`-`
NCBI Name	`LOC131015628`
原始查询	`SmilChr01G000255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CTP synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828137]; symbol=AT4G02120; hit=AT4G02120; species=arabidopsis; confidence=high
产物	CTP synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828137]; symbol=AT4G02120; hit=AT4G02120; species=arabidopsis; confidence=high
Arabidopsis	`AT4G02120` (AT4G02120) CTP synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828137] identity=80.1; qcov=0.988; evalue=0; confidence=high
Rice	`Os12g0556600` - identity=74; qcov=0.998; evalue=0; confidence=high
GO	GO:0003883 (CTP synthase activity); GO:0006241 (CTP biosynthetic process); GO:0019856 (pyrimidine nucleobase biosynthetic process); GO:0042802 (identical protein binding)
KEGG	smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00117 (GATase); PF06418 (CTP_synth_N); PF07722 (Peptidase_C26)
InterPro	-
eggNOG	-
NR	GeneID:131015628

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800057.1`
2	Cytosol	细胞质基质	1.00000	`XP_057800057.1`
3	Nucleus	细胞核	0.40000	`XP_057800057.1`
4	Chromosome	染色体	0.00000	`XP_057800057.1`
5	Centromere	着丝粒	0.00000	`XP_057800057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:4890283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B76
`Chr1:4890804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B97,C56,C60,D1
`Chr1:4892080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:4893383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B97,C56,C60,D1
`Chr1:4894558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800057.1

562 aa

281

562

CTP_synth_N

GATase

PF06418 CTP_synth_N 2-272 aa PF00117 GATase 310-543 aa

XP_057800063.1

562 aa

281

562

CTP_synth_N

GATase

PF06418 CTP_synth_N 2-272 aa PF00117 GATase 310-543 aa

XP_057800064.1

513 aa

256

513

CTP_synth_N

GATase

Peptidase_C26

PF06418 CTP_synth_N 1-223 aa PF00117 GATase 261-494 aa PF07722 Peptidase_C26 336-478 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800057.1`	Pfam	`PF06418`	CTP_synth_N	Domain	2	272	1.6e-122	408.7	CTP synthase N-terminus
`XP_057800057.1`	Pfam	`PF00117`	GATase	Domain	310	543	6.8e-40	137.5	Glutamine amidotransferase class-I
`XP_057800063.1`	Pfam	`PF06418`	CTP_synth_N	Domain	2	272	1.6e-122	408.7	CTP synthase N-terminus
`XP_057800063.1`	Pfam	`PF00117`	GATase	Domain	310	543	6.8e-40	137.5	Glutamine amidotransferase class-I
`XP_057800064.1`	Pfam	`PF06418`	CTP_synth_N	Domain	1	223	3e-93	312.7	CTP synthase N-terminus
`XP_057800064.1`	Pfam	`PF00117`	GATase	Domain	261	494	5.5e-40	137.8	Glutamine amidotransferase class-I
`XP_057800064.1`	Pfam	`PF07722`	Peptidase_C26	Domain	336	478	0.00017	22.2	Peptidase C26

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944074.1
ATATGTGGAAATATTTGCTCATAGGCCCATTGCGAATGGGCCATTATGGATTCAAATCCACTGAGATTTGCTAAATTTTCCTTTTCACATTTTGCCATTTTTGTCATTTCGGAAGGTTTTAGGAATTAGGGCTTTAGCCTTTCTATCAACTATTTATGTTAACGAAACCCTCGTGACTGGGAAACTGAAAGCCGTTGTGGAAACAGGGATAGCGACTGCATTTGACATAGCGGAGAGAGATTCCTTTATTCTCCGAGTCA...

XM_057944080.1
TAAATTTTCCTTTTCACATTTTGCCATTTTTGTCATTTCGGAAGGTTTTAGGAATTAGGGCTTTAGCCTTTCTATCAACTATTTATGTTAACGAAACCCTCGTGACTGGGAAACTGAAAGCCGTTGTGGAAACAGGGATAGCGACTGCATTTGACATAGCGGAGAGAGATTCCTTTATTCTCCGAGTCAAGAACTTTTCCTCTTTCCCGCTCGGATTCGACACACAATCTCGACGAATAACAGATTTAATATTCGATTCC...

CDS

3 records

下载 CDS FASTA

LOC131015628
ATGAAGTATGTTTTGGTCACCGGAGGCGTGGTGAGCGGCCTCGGAAAAGGCGTGACCGCCAGCAGCATCGGCGTCGTGCTCAAAGCGTGCGGCCTGCGCGTCACCTCCATTAAAATTGATCCCTATTTGAATACAGATGCTGGTACGATGTCCCCATTTGAGCATGGGGAGGTTTTTGTTCTCGATGATGGAGGAGAGGTGGATCTTGATTTAGGAAACTATGAAAGGTTTCTGGATGTGAGACTAACTAGAGACAACAA...

Protein

3 records

下载 Protein FASTA

XP_057800057.1
MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNITTGKIYQSVLEQERRGDYLGKTVQVVPHITEAIKNWIESVSHIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLLFSVGQNNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHFLACRSAEPLLENTRQKLSQFCHVPVGNILNIHDVPNIWHIPLLLRSQ...

XP_057800063.1
MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNITTGKIYQSVLEQERRGDYLGKTVQVVPHITEAIKNWIESVSHIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLLFSVGQNNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHFLACRSAEPLLENTRQKLSQFCHVPVGNILNIHDVPNIWHIPLLLRSQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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