当前解析结果
SmilChr01G000257| 统一新 Gene ID | SmilChr01G000257 |
|---|---|
| 名称 | SmilChr01G000257 |
| 描述 | uncharacterized SmilChr01G000257 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 4921327 - 4923894 / + |
| NCBI Gene ID | LOC131006784 |
|---|---|
| GeneID | 131006784 |
| locus_tag | - |
| NCBI Name | LOC131006784 |
| 原始查询 | SmilChr01G000257 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=31.8; qcov=0.185; evalue=2.6e-16; confidence=weak |
| Rice | Os12g0142900- identity=26.7; qcov=0.262; evalue=1.03e-22; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006784 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789942.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057789942.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789942.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789942.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789942.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:4921398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,C57,D3 |
Chr1:4921413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr1:4921438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B66,C77 |
Chr1:4921656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr1:4921759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B20,C12 |
Chr1:4921794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B30,B42,B94,B97,C47 |
Chr1:4921923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,C70,C83,C86 |
Chr1:4921954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:4922103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:4922158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B136 |
Chr1:4922185 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C86 |
Chr1:4922185 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789942.1PF17919
RT_RNaseH_2 95-192 aa
PF17917
RT_RNaseH 121-224 aa
PF00075
RNase_H 274-394 aa
PF13456
RVT_3 276-395 aa
PF00665
rve 445-523 aa
PF31073
DUF8803 650-714 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789942.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 95 | 192 | 8.5e-24 | 84.2 | RNase H-like domain found in reverse transcriptase |
XP_057789942.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 121 | 224 | 7.6e-24 | 84.6 | RNase H-like domain found in reverse transcriptase |
XP_057789942.1 |
Pfam | PF00075 |
RNase_H | Domain | 274 | 394 | 1e-08 | 36.2 | RNase H |
XP_057789942.1 |
Pfam | PF13456 |
RVT_3 | Domain | 276 | 395 | 3.7e-20 | 72.8 | Reverse transcriptase-like |
XP_057789942.1 |
Pfam | PF00665 |
rve | Domain | 445 | 523 | 5.4e-10 | 40.2 | Integrase core domain |
XP_057789942.1 |
Pfam | PF31073 |
DUF8803 | Domain | 650 | 714 | 4.7e-13 | 49.5 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。