当前解析结果
SmilChr01G000258| 统一新 Gene ID | SmilChr01G000258 |
|---|---|
| 名称 | SmilChr01G000258 |
| 描述 | 65-kDa microtubule-associated protein 9-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 4955894 - 4959168 / - |
| NCBI Gene ID | LOC131015667 |
|---|---|
| GeneID | 131015667 |
| locus_tag | - |
| NCBI Name | LOC131015667 |
| 原始查询 | SmilChr01G000258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 65-kDa microtubule-associated protein 9-like |
| 产物 | 65-kDa microtubule-associated protein 9-like |
| Arabidopsis | AT5G62250 (MAP65-9)microtubule-associated protein 65-9 [Source:NCBI gene (formerly Entrezgene);Acc:836346] identity=33.3; qcov=0.712; evalue=6.9e-12; confidence=low |
| Rice | Os05g0552900- identity=45.6; qcov=0.576; evalue=1.96e-14; confidence=low |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057800086.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057800074.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057800074.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057800074.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057800086.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:4956156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr1:4956352 |
C |
CA |
1bp_insertion | frameshift_variant | 20 | A23,A24,B126,B132,B23,B3,B32,B42,B61,B79,B80,B81,C19,C2,C35,C47,C48,C58,C62,D8 |
Chr1:4956511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B119,C4,C46,C72 |
Chr1:4956513 |
G |
A |
EMS_canonical_SNV | stop_gained | 56 | A10,A22,A23,A5,A6,A7,A8,B111,B113,B122,B134,B135,B137,B14,B15,B16,B19,B27,B3,B45,B53,B59,B65,B67,B71,B76,B81,B84,B88,B89,B91,B93,B97,B99,C10,C11,C16,C24,C3,C35,C41,C42,C44,C46,C47,C49,C5,C54,C71,C72,C77,C80,C81,C86,C9,D5 |
Chr1:4956517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,C76 |
Chr1:4957591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B70,C80 |
Chr1:4957601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr1:4957604 |
G |
A |
EMS_canonical_SNV | stop_gained | 34 | A20,B111,B120,B134,B139,B140,B18,B20,B21,B26,B29,B38,B39,B41,B43,B45,B74,B79,B91,B95,C1,C18,C25,C28,C29,C44,C49,C63,C67,C69,C72,D2,D4,D9 |
Chr1:4957692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C71,D1 |
Chr1:4957694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr1:4957698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B37,B38,C12,C83 |
Chr1:4957699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B33,B70,C80 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
11 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。