当前解析结果
SmilChr01G000262| 统一新 Gene ID | SmilChr01G000262 |
|---|---|
| 名称 | SmilChr01G000262 |
| 描述 | uncharacterized SmilChr01G000262 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 5059298 - 5083570 / - |
| NCBI Gene ID | LOC131015730 |
|---|---|
| GeneID | 131015730 |
| locus_tag | - |
| NCBI Name | LOC131015730 |
| 原始查询 | SmilChr01G000262 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os05g0155700; species=rice; confidence=high |
| 产物 | hit=Os05g0155700; species=rice; confidence=high |
| Arabidopsis | AT5G47900 (AT5G47900)heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:834841] identity=56.4; qcov=0.825; evalue=5.58e-150; confidence=high |
| Rice | Os05g0155700- identity=58.1; qcov=0.923; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07786 (HGSNAT_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015730 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057800143.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057800160.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057800167.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057800151.1 |
| 5 | Vacuole | 液泡 | 0.40000 | XP_057800151.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:5070999 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B32 |
Chr1:5070999 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B32 |
Chr1:5071013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:5071022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B138,B55,B76,D10 |
Chr1:5071026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:5071048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B29 |
Chr1:5072239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:5072241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:5072260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B76 |
Chr1:5072283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:5079791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B70 |
Chr1:5079819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B70,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800136.1PF07786
HGSNAT_cat 51-196 aa
XP_057800143.1PF07786
HGSNAT_cat 51-196 aa
XP_057800151.1PF07786
HGSNAT_cat 51-196 aa
XP_057800155.1PF07786
HGSNAT_cat 51-196 aa
XP_057800160.1PF07786
HGSNAT_cat 51-196 aa
XP_057800167.1PF07786
HGSNAT_cat 51-196 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800136.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 9.7e-07 | 29.3 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057800143.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 9.5e-07 | 29.3 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057800151.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 8.8e-07 | 29.4 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057800155.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 8.7e-07 | 29.4 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057800160.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 8.7e-07 | 29.4 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057800167.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 51 | 196 | 8.5e-07 | 29.4 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。