Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000275`

染色体: Chr01 坐标: 5461674-5465796 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000275`
名称	SmilChr01G000275
描述	calmodulin-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	5461674 - 5465796 / `+`

ID 对照

NCBI Gene ID	`LOC131015821`
GeneID	`131015821`
locus_tag	`-`
NCBI Name	`LOC131015821`
原始查询	`SmilChr01G000275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-like
产物	calmodulin-like
Arabidopsis	`AT3G43810` (CAM7) calmodulin 7 [Source:NCBI gene (formerly Entrezgene);Acc:823492] identity=98.7; qcov=0.987; evalue=1.15e-104; confidence=high
Rice	`Os03g0319300` (OsCam1-1) - identity=98; qcov=0.993; evalue=2.72e-104; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0030234 (enzyme regulator activity)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8); PF14658 (EF-hand_9)
InterPro	-
eggNOG	-
NR	GeneID:131015821

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800241.1`
2	Cytoplasm	细胞质	0.60000	`XP_057800251.1`
3	Cytosol	细胞质基质	0.60000	`XP_057800251.1`
4	Vacuole	液泡	0.20000	`XP_057800241.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057800251.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:5462853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr1:5462867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B20,B47
`Chr1:5462894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr1:5462897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B123,D2,D6
`Chr1:5462932`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C73
`Chr1:5462932`	`G`	`GT`	1bp_insertion	CDS_variant	1	C73
`Chr1:5462960`	`CT`	`C`	1bp_deletion	frameshift_variant	3	B133,B55,C11
`Chr1:5462960`	`CT`	`C`	1bp_deletion	CDS_variant	3	B133,B55,C11
`Chr1:5462999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,C34,C61
`Chr1:5463012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,C34,C61
`Chr1:5463054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B20,B47
`Chr1:5463058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800241.1

186 aa

186

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_9

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-41 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 14-37 aa PF14658 EF-hand_9 15-75 aa PF13833 EF-hand_8 25-75 aa PF00036 EF-hand_1 48-75 aa PF13202 EF-hand_5 49-73 aa PF13499 EF-hand_7 83-147 aa PF00036 EF-hand_1 85-112 aa PF13405 EF-hand_6 85-114 aa PF13202 EF-hand_5 86-110 aa PF13833 EF-hand_8 98-146 aa PF00036 EF-hand_1 121-148 aa PF13202 EF-hand_5 124-146 aa

XP_057800251.1

150 aa

150

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_9

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-41 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 14-37 aa PF14658 EF-hand_9 15-75 aa PF13833 EF-hand_8 25-75 aa PF00036 EF-hand_1 48-75 aa PF13202 EF-hand_5 49-73 aa PF13833 EF-hand_8 82-105 aa PF13499 EF-hand_7 83-147 aa PF00036 EF-hand_1 85-112 aa PF13405 EF-hand_6 85-114 aa PF13202 EF-hand_5 86-110 aa PF13833 EF-hand_8 98-146 aa PF00036 EF-hand_1 121-148 aa PF13202 EF-hand_5 124-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800241.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	2.7e-41	136.8	EF hand domain
`XP_057800241.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	41	8.2e-32	106.6	EF-hand domain
`XP_057800241.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	7e-41	139.1	EF-hand domain pair
`XP_057800241.1`	Pfam	`PF13202`	EF-hand_5	Domain	14	37	1.4e-26	91.4	EF hand
`XP_057800241.1`	Pfam	`PF14658`	EF-hand_9	Domain	15	75	1e-19	71.4	EF-hand domain
`XP_057800241.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	75	1.3e-27	96.0	EF-hand domain pair
`XP_057800241.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	75	2.7e-41	136.8	EF hand domain
`XP_057800241.1`	Pfam	`PF13202`	EF-hand_5	Domain	49	73	1.4e-26	91.4	EF hand
`XP_057800241.1`	Pfam	`PF13499`	EF-hand_7	Domain	83	147	7e-41	139.1	EF-hand domain pair
`XP_057800241.1`	Pfam	`PF00036`	EF-hand_1	Domain	85	112	2.7e-41	136.8	EF hand domain
`XP_057800241.1`	Pfam	`PF13405`	EF-hand_6	Domain	85	114	8.2e-32	106.6	EF-hand domain
`XP_057800241.1`	Pfam	`PF13202`	EF-hand_5	Domain	86	110	1.4e-26	91.4	EF hand
`XP_057800241.1`	Pfam	`PF13833`	EF-hand_8	Domain	98	146	1.3e-27	96.0	EF-hand domain pair
`XP_057800241.1`	Pfam	`PF00036`	EF-hand_1	Domain	121	148	2.7e-41	136.8	EF hand domain
`XP_057800241.1`	Pfam	`PF13202`	EF-hand_5	Domain	124	146	1.4e-26	91.4	EF hand
`XP_057800251.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	7.5e-42	138.5	EF hand domain
`XP_057800251.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	41	2.5e-32	108.2	EF-hand domain
`XP_057800251.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	2.9e-41	140.4	EF-hand domain pair
`XP_057800251.1`	Pfam	`PF13202`	EF-hand_5	Domain	14	37	3.9e-27	93.1	EF hand
`XP_057800251.1`	Pfam	`PF14658`	EF-hand_9	Domain	15	75	3.7e-20	72.9	EF-hand domain
`XP_057800251.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	75	3.5e-28	97.8	EF-hand domain pair
`XP_057800251.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	75	7.5e-42	138.5	EF hand domain
`XP_057800251.1`	Pfam	`PF13202`	EF-hand_5	Domain	49	73	3.9e-27	93.1	EF hand
`XP_057800251.1`	Pfam	`PF13833`	EF-hand_8	Domain	82	105	3.5e-28	97.8	EF-hand domain pair
`XP_057800251.1`	Pfam	`PF13499`	EF-hand_7	Domain	83	147	2.9e-41	140.4	EF-hand domain pair
`XP_057800251.1`	Pfam	`PF00036`	EF-hand_1	Domain	85	112	7.5e-42	138.5	EF hand domain
`XP_057800251.1`	Pfam	`PF13405`	EF-hand_6	Domain	85	114	2.5e-32	108.2	EF-hand domain
`XP_057800251.1`	Pfam	`PF13202`	EF-hand_5	Domain	86	110	3.9e-27	93.1	EF hand
`XP_057800251.1`	Pfam	`PF13833`	EF-hand_8	Domain	98	146	3.5e-28	97.8	EF-hand domain pair
`XP_057800251.1`	Pfam	`PF00036`	EF-hand_1	Domain	121	148	7.5e-42	138.5	EF hand domain
`XP_057800251.1`	Pfam	`PF13202`	EF-hand_5	Domain	124	146	3.9e-27	93.1	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009098697.1
GATTTTATATAATAGCCCCACGCTTTACCTTCATTTTCTTCGTTGACGCTCTCTCTCTCTCTACACCAATTCGACACTGATTTTGTAGTATCGCCTGACAGCAAAAAAGCTTTGTGAGGAGAAGAGATGGCGGTTCAGCTCACCGATGAACAGATCTCCGAATTCAAGGAAGCATTTTCTCTATTTGACAAGGATGGCGACGGTTGCATCACCACGAAGGAGTTGGGGACTGTGATGCGTTCTTTGGGACAGAACCCAAC...

XM_057944258.1
GATTTTATATAATAGCCCCACGCTTTACCTTCATTTTCTTCGTTGACGCTCTCTCTCTCTCTACACCAATTCGACACTGATTTTGTAGTATCGCCTGACAGCAAAAAAGCTTTGTGAGGAGAAGAGATGGCGGTTCAGCTCACCGATGAACAGATCTCCGAATTCAAGGAAGCATTTTCTCTATTTGACAAGGATGGCGACGGTTGCATCACCACGAAGGAGTTGGGGACTGTGATGCGTTCTTTGGGACAGAACCCAAC...

CDS

2 records

下载 CDS FASTA

LOC131015821
ATGGCGGTTCAGCTCACCGATGAACAGATCTCCGAATTCAAGGAAGCATTTTCTCTATTTGACAAGGATGGCGACGGTTGCATCACCACGAAGGAGTTGGGGACTGTGATGCGTTCTTTGGGACAGAACCCAACCGAGGCTGAGCTCCAGGATATGATTAATGAGGTTGATGCTGATGGTAATGGAACAATTGACTTCCCTGAGTTCCTCAACTTGATGGCTCGCAAGATGAAGGACACTGATTCCGAGGAGGAACTCAA...

Protein

2 records

下载 Protein FASTA

XP_057800241.1
MAVQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKKRQQRIKSSKRGIENSNGNASSNGRRKKSKLRECLIL

XP_057800251.1
MAVQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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