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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr01G000373

Chromosome: Chr01 Coordinates: 7686227-7698295 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr01G000373
NameSmilChr01G000373
DescriptionSAC3 family protein C
Chromosome / SeqIDChr01 / NC_080387.1
Coordinates and Strand7686227 - 7698295 / +

ID Mapping

NCBI Gene IDLOC131006465
GeneID131006465
locus_tag-
NCBI NameLOC131006465
Original querySmilChr01G000373

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
DescriptionSAC3 family protein C
ProductSAC3 family protein C
ArabidopsisAT3G54380 (SAC3C)
SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Source:NCBI gene (formerly Entrezgene);Acc:824604]
identity=53.4; qcov=0.845; evalue=1.31e-123; confidence=high
RiceOs03g0352200
-
identity=68.8; qcov=0.116; evalue=2.22e-16; confidence=weak
GOGO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006406 (mRNA export from nucleus); GO:0070390 (transcription export complex 2)
KEGG-
PfamPF03399 (SAC3_GANP)
InterPro-
eggNOG-
NRGeneID:131006465

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057789605.1
2 Nucleus 细胞核 0.40000 XP_057789606.1
3 Cytoplasmic granule 细胞质颗粒 0.20000 XP_057789605.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.20000 XP_057789605.1
5 Chromosome 染色体 0.00000 XP_057789605.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr1:7686517 G A EMS_canonical_SNV CDS_variant 1 B82
Chr1:7686529 C T EMS_canonical_SNV CDS_variant 1 B104
Chr1:7687801 C T EMS_canonical_SNV CDS_variant 1 B2
Chr1:7687820 G A EMS_canonical_SNV CDS_variant 1 B44
Chr1:7689755 G A EMS_canonical_SNV CDS_variant 2 B78,C8
Chr1:7692154 G A EMS_canonical_SNV CDS_variant 1 B104

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057789605.1
420 aa
N
1
210
420
SAC3_GANP
C
PF03399 SAC3_GANP 86-375 aa
XP_057789606.1
414 aa
N
1
207
414
SAC3_GANP
C
PF03399 SAC3_GANP 86-375 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057789605.1 Pfam PF03399 SAC3_GANP Family 86 375 1.5e-75 255.0 SAC3/GANP family
XP_057789606.1 Pfam PF03399 SAC3_GANP Family 86 375 1.4e-75 255.1 SAC3/GANP family

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA
XM_057933622.1
TCACCCATGAGGTTGCCCTCATCCAAGACCAATAAAGCTAATTGACTCAACTTGACTTGTTAAAGATTGCAGTTAAAGAAGAAGAAGAAGAAGAGCTCAAGGTTACCTCCGAATTGTTAATAAAAGAAGAAAAAAGAAGAAGAAGAGCTCAAGGTCTTCAACCATGGCGGACAGACGTCGTCAGCCCTACAAACCTAGAAGAAACGATTCTTCTTCATCCTATTCGTCACACTCCGATTCCATCCAATCCAATATTCCAA...
XM_057933623.1
GTTAAAGATTGCAGTTAAAGAAGAAGAAGAAGAAGAGCTCAAGGTTACCTCCGAATTGTTAATAAAAGAAGAAAAAAGAAGAAGAAGAGCTCAAGGTCTTCAACCATGGCGGACAGACGTCGTCAGCCCTACAAACCTAGAAGAAACGATTCTTCTTCATCCTATTCGTCACACTCCGATTCCATCCAATCCAATATTCCAAAAGCTTCTAATCAAATTCCCAACAGCTCCAGGATCAGCCCCTCCTATAAAAGCACCAC...

CDS

2 records

Download CDS FASTA
LOC131006465
ATGGCGGACAGACGTCGTCAGCCCTACAAACCTAGAAGAAACGATTCTTCTTCATCCTATTCGTCACACTCCGATTCCATCCAATCCAATATTCCAAAAGCTTCTAATCAAATTCCCAACAGCTCCAGGATCAGCCCCTCCTATAAAAGCACCACCTCCAGTTCGAAAACTGATGATTTTAGCAACAGGCTTGACAGTAATCATTATGGTGATGACGATCGAGATCCCCCAAACCTAATCGGGGCTTGCCCTTTCATGTG...
LOC131006465
ATGGCGGACAGACGTCGTCAGCCCTACAAACCTAGAAGAAACGATTCTTCTTCATCCTATTCGTCACACTCCGATTCCATCCAATCCAATATTCCAAAAGCTTCTAATCAAATTCCCAACAGCTCCAGGATCAGCCCCTCCTATAAAAGCACCACCTCCAGTTCGAAAACTGATGATTTTAGCAACAGGCTTGACAGTAATCATTATGGTGATGACGATCGAGATCCCCCAAACCTAATCGGGGCTTGCCCTTTCATGTG...

Protein

2 records

Download Protein FASTA
XP_057789605.1
MADRRRQPYKPRRNDSSSSYSSHSDSIQSNIPKASNQIPNSSRISPSYKSTTSSSKTDDFSNRLDSNHYGDDDRDPPNLIGACPFMCPVEERERRERLRDLAVFERLHGNPAKTSPTLAVKKFCRTISSKDIKASDVRPVPVLEDTLNYLLDLLCSSGRPFDVVHDFIFDRTRSIRQDLSMQNIVTDQVICMYERMVKFHIISYHHLHRSSRTPNTASMFHLNLEQLMKVMTTLFSLYDVNRAAHSMSPNESEFFSLYLL...
XP_057789606.1
MADRRRQPYKPRRNDSSSSYSSHSDSIQSNIPKASNQIPNSSRISPSYKSTTSSSKTDDFSNRLDSNHYGDDDRDPPNLIGACPFMCPVEERERRERLRDLAVFERLHGNPAKTSPTLAVKKFCRTISSKDIKASDVRPVPVLEDTLNYLLDLLCSSGRPFDVVHDFIFDRTRSIRQDLSMQNIVTDQVICMYERMVKFHIISYHHLHRSSRTPNTASMFHLNLEQLMKVMTTLFSLYDVNRAAHSMSPNESEFFSLYLL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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