Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000380

染色体: Chr01 坐标: 7818819-7822732 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000380
名称SmilChr01G000380
描述acyl-coenzyme A thioesterase 2, chloroplastic-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向7818819 - 7822732 / +

ID 对照

NCBI Gene IDLOC131006472
GeneID131006472
locus_tag-
NCBI NameLOC131006472
原始查询SmilChr01G000380

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述acyl-coenzyme A thioesterase 2, chloroplastic-like
产物acyl-coenzyme A thioesterase 2%2C chloroplastic-like
ArabidopsisAT5G48370 (AT5G48370)
Thioesterase/thiol ester dehydrase-isomerase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834890]
identity=72.6; qcov=0.984; evalue=0; confidence=high
RiceOs09g0517700
-
identity=69.4; qcov=0.956; evalue=0; confidence=high
GOGO:0006637 (acyl-CoA metabolic process); GO:0047617 (fatty acyl-CoA hydrolase activity)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131006472

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Peroxisome 过氧化物酶体 1.00000 XP_057789614.1
2 Chloroplast 叶绿体 0.60000 XP_057789613.1
3 Mitochondrion 线粒体 0.40000 XP_057789613.1
4 Cytosol 细胞质基质 0.20000 XP_057789614.1
5 Nucleus 细胞核 0.00000 XP_057789613.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:7818971 AG A 1bp_deletion frameshift_variant 19 A22,B11,B124,B20,B28,B36,B71,B94,C13,C27,C30,C41,C51,C6,C7,C77,D1,D10,D11
Chr1:7819064 G A EMS_canonical_SNV CDS_variant 1 C19
Chr1:7819068 C T EMS_canonical_SNV CDS_variant 2 C3,D8
Chr1:7820089 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:7820101 G A EMS_canonical_SNV CDS_variant 2 C3,D8
Chr1:7821602 G A EMS_canonical_SNV CDS_variant 4 B118,B78,C5,C8
Chr1:7821669 C CA 1bp_insertion frameshift_variant 5 A13,A7,B81,B84,C59
Chr1:7821669 C CA 1bp_insertion CDS_variant 5 A13,A7,B81,B84,C59
Chr1:7821735 G A EMS_canonical_SNV CDS_variant 3 B107,B37,B88
Chr1:7821879 C T EMS_canonical_SNV CDS_variant 1 A20
Chr1:7822101 TGA T 2bp_deletion frameshift_variant 1 B44
Chr1:7822101 TGA T 2bp_deletion CDS_variant 1 B44

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057933630.1
AATACACTTTTCTTTTTCTCTCTAATCTCTGTGTCTTGGCTATTGAGAATTTGAGAGGGAGGGAGTAGTAGTTGCTCAAGAAGATGGAATGACGAGTGAATAATATTTTGACAGCTTCTGGTTGAGTTGAAAGAAAATCCGAATCCAATGGAAGATTCCATCACGACTCCGATCCCCATCTTCTCGACGTTAATTTCCCCTCTGAGTCTCAACGGAAGTGAATCGAATTCGAATTCGAGGAGAAAGCCCCTGAGCTTGTG...
XM_057933633.1
AATACACTTTTCTTTTTCTCTCTAATCTCTGTGTCTTGGCTATTGAGAATTTGAGAGGGAGGGAGTAGTAGTTGCTCAAGAAGATGGAATGACGAGTGAATAATATTTTGACAGCTTCTGGTTGAGTTGAAAGAAAATCCGAATCCAATGGAAGATTCCATCACGACTCCGATCCCCATCTTCTCGACGTTAATTTCCCCTCTGAGTCTCAACGGAAGTGAATCGAATTCGAATTCGAGGAGAAAGCCCCTGAGCTTGTG...

CDS

4 records

下载 CDS FASTA
LOC131006472
ATGGAAGATTCCATCACGACTCCGATCCCCATCTTCTCGACGTTAATTTCCCCTCTGAGTCTCAACGGAAGTGAATCGAATTCGAATTCGAGGAGAAAGCCCCTGAGCTTGTGGCCAGGAATGTACCATTCACCCGTGACGATTGCTCTTTGGGAGACGAGGTCGAAAACCTTCGAGAGACTTCTGGATCCCCCACTGGATGCTCCCCCGCAGACTGAATTGCTCACCAAAACCCCATCGCGGAGCAGAATGACTATTCT...
LOC131006472
ATGGAAGATTCCATCACGACTCCGATCCCCATCTTCTCGACGTTAATTTCCCCTCTGAGTCTCAACGGAAGTGAATCGAATTCGAATTCGAGGAGAAAGCCCCTGAGCTTGTGGCCAGGAATGTACCATTCACCCGTGACGATTGCTCTTTGGGAGACGAGGTCGAAAACCTTCGAGAGACTTCTGGATCCCCCACTGGATGCTCCCCCGCAGACTGAATTGCTCACCAAAACCCCATCGCGGAGCAGAATGACTATTCT...

Protein

4 records

下载 Protein FASTA
XP_057789613.1
MEDSITTPIPIFSTLISPLSLNGSESNSNSRRKPLSLWPGMYHSPVTIALWETRSKTFERLLDPPLDAPPQTELLTKTPSRSRMTILYNFSTDFILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCADDDSTTRPLYLVTASVDKMVLKKPISVDIDLRISGAVTWVGRSSIEIQLDVTQPPTESAEATDSVVLTATFIFVARDYKTLKAAPVNRLSPETEREKSLYEAAEARNKVRKSKIKGEQKTIENGGINRVAA...
XP_057789614.1
MEDSITTPIPIFSTLISPLSLNGSESNSNSRRKPLSLWPGMYHSPVTIALWETRSKTFERLLDPPLDAPPQTELLTKTPSRSRMTILYNFSTDFILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCADDDSTTRPLYLVTASVDKMVLKKPISVDIDLRISGAVTWVGRSSIEIQLDVTQPPTESAEATDSVVLTATFIFVARDYKTLKAAPVNRLSPETEREKSLYEAAEARNKVRKSKIKGEQKTIENGGINRVAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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