当前解析结果
SmilChr01G000384| 统一新 Gene ID | SmilChr01G000384 |
|---|---|
| 名称 | SmilChr01G000384 |
| 描述 | uncharacterized SmilChr01G000384 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 7928976 - 7935066 / - |
| NCBI Gene ID | LOC131006474 |
|---|---|
| GeneID | 131006474 |
| locus_tag | - |
| NCBI Name | LOC131006474 |
| 原始查询 | SmilChr01G000384 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.1; qcov=0.073; evalue=7.61e-21; confidence=weak |
| Rice | Os04g0191000- identity=29.2; qcov=0.494; evalue=1.52e-90; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF03732 (PEG10_N-capsid); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006474 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789617.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057789617.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057789617.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057789617.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:7930662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:7930665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:7930680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B98,C48,C78 |
Chr1:7930695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr1:7930698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C84 |
Chr1:7930702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:7930710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr1:7930734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:7930736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr1:7930743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:7930748 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | B73 |
Chr1:7930748 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789617.1PF03732
PEG10_N-capsid 111-183 aa
PF00078
RVT_1 972-1126 aa
PF17919
RT_RNaseH_2 1191-1287 aa
PF17917
RT_RNaseH 1215-1318 aa
PF17921
Integrase_H2C2 1423-1480 aa
PF00665
rve 1501-1594 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789617.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 111 | 183 | 5.1e-11 | 43.5 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057789617.1 |
Pfam | PF00078 |
RVT_1 | Domain | 972 | 1126 | 2e-31 | 110.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057789617.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1191 | 1287 | 5.9e-32 | 110.4 | RNase H-like domain found in reverse transcriptase |
XP_057789617.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1215 | 1318 | 2.6e-35 | 121.4 | RNase H-like domain found in reverse transcriptase |
XP_057789617.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1423 | 1480 | 2.1e-14 | 54.1 | Integrase zinc binding domain |
XP_057789617.1 |
Pfam | PF00665 |
rve | Domain | 1501 | 1594 | 3.2e-15 | 57.0 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。