当前解析结果
SmilChr01G000433| 统一新 Gene ID | SmilChr01G000433 |
|---|---|
| 名称 | SmilChr01G000433 |
| 描述 | uncharacterized SmilChr01G000433 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 8658607 - 8661648 / - |
| NCBI Gene ID | LOC131015057 |
|---|---|
| GeneID | 131015057 |
| locus_tag | - |
| NCBI Name | LOC131015057 |
| 原始查询 | SmilChr01G000433 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430]; symbol=AT2G05642; hit=AT2G05642; species=arabidopsis; confidence=weak |
| 产物 | Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430]; symbol=AT2G05642; hit=AT2G05642; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G05642 (AT2G05642)Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430] identity=21.6; qcov=0.603; evalue=1.01e-22; confidence=weak |
| Rice | Os07g0190600- identity=23.6; qcov=0.663; evalue=1.25e-15; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006281 (DNA repair); GO:0006310 (DNA recombination) |
| KEGG | - |
| Pfam | PF02721 (DUF223); PF08646 (Rep_fac-A_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015057 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799279.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799279.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799279.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799279.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799279.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:8658617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr1:8658650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,C19,C82 |
Chr1:8658669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:8658685 |
AGC |
A |
2bp_deletion | frameshift_variant | 50 | A18,A20,A23,B105,B11,B113,B114,B12,B127,B128,B138,B15,B25,B37,B42,B43,B44,B46,B47,B5,B55,B7,B70,B76,B77,B81,B85,B87,B91,B92,C28,C29,C31,C38,C44,C49,C50,C55,C57,C63,C65,C66,C72,C81,C83,C84,C86,C87,D11,D8 |
Chr1:8658715 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B1,C13 |
Chr1:8658715 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B1,C13 |
Chr1:8658724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:8658795 |
G |
A |
EMS_canonical_SNV | stop_gained | 38 | A2,A21,A9,B100,B101,B107,B112,B115,B12,B123,B134,B20,B29,B31,B48,B59,B66,B78,B8,B81,B85,B94,C1,C11,C13,C14,C36,C4,C43,C49,C58,C60,C63,C69,C75,D1,D10,D3 |
Chr1:8659067 |
TCA |
T |
2bp_deletion | frameshift_variant | 13 | A10,A7,B117,B30,B37,B59,B65,B75,C16,C50,C57,C70,C86 |
Chr1:8659070 |
G |
GGA |
2bp_insertion | frameshift_variant | 13 | A10,A7,B117,B30,B37,B59,B65,B75,C16,C50,C57,C70,C86 |
Chr1:8659216 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A19,A7,B129,B139,B18,B36,B41,B48,B61,B77,B98,B99,C13,C16,C39,C53,C62,C64,C66,C78,C81,D7 |
Chr1:8659272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B70,B76,B98,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799279.1PF02721
DUF223 14-92 aa
PF08646
Rep_fac-A_C 269-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799279.1 |
Pfam | PF02721 |
DUF223 | Domain | 14 | 92 | 3e-08 | 34.6 | Domain of unknown function DUF223 |
XP_057799279.1 |
Pfam | PF08646 |
Rep_fac-A_C | Domain | 269 | 374 | 4e-12 | 46.9 | Replication factor-A C terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。