当前解析结果
SmilChr01G000448| 统一新 Gene ID | SmilChr01G000448 |
|---|---|
| 名称 | SmilChr01G000448 |
| 描述 | uncharacterized SmilChr01G000448 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 9162593 - 9167880 / - |
| NCBI Gene ID | LOC131015604 |
|---|---|
| GeneID | 131015604 |
| locus_tag | - |
| NCBI Name | LOC131015604 |
| 原始查询 | SmilChr01G000448 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=29.7; qcov=0.338; evalue=1.92e-46; confidence=low |
| Rice | Os06g0484800- identity=27.7; qcov=0.744; evalue=1.12e-97; confidence=low |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015604 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800052.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057800052.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057800052.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800052.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800052.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:9162612 |
AG |
A |
1bp_deletion | frameshift_variant | 57 | A16,A18,A22,A25,A4,B1,B115,B117,B121,B127,B129,B133,B14,B16,B17,B18,B2,B34,B40,B41,B46,B48,B49,B5,B50,B52,B58,B60,B72,B78,B89,B93,B99,C10,C11,C16,C2,C20,C22,C23,C30,C32,C34,C47,C48,C55,C68,C69,C73,C83,C85,C87,C9,D10,D2,D4,D6 |
Chr1:9162642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B88,D3 |
Chr1:9162686 |
CG |
C |
1bp_deletion | frameshift_variant | 8 | A18,B110,B124,B16,B8,B88,C22,C67 |
Chr1:9162711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:9162713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B139,B44,C86 |
Chr1:9162716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B118,C5 |
Chr1:9162725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C5 |
Chr1:9162731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B139,B44 |
Chr1:9162753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B139,B44 |
Chr1:9162758 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A11,B122,B128,B137,B138,B139,B21,B24,B26,B29,B61,B85,B97,C26,C64,C66,C72,C86 |
Chr1:9162765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A7,B84,C59 |
Chr1:9162857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,B39,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800052.1PF03372
Exo_endo_phos 49-180 aa
PF00078
RVT_1 390-664 aa
PF13966
zf-RVT 926-1013 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800052.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 49 | 180 | 1.8e-10 | 41.7 | Endonuclease/Exonuclease/phosphatase family |
XP_057800052.1 |
Pfam | PF00078 |
RVT_1 | Domain | 390 | 664 | 2e-15 | 57.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057800052.1 |
Pfam | PF13966 |
zf-RVT | Domain | 926 | 1013 | 3e-15 | 57.3 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。