当前解析结果
SmilChr01G000462| 统一新 Gene ID | SmilChr01G000462 |
|---|---|
| 名称 | SmilChr01G000462 |
| 描述 | uncharacterized SmilChr01G000462 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 9461883 - 9471237 / - |
| NCBI Gene ID | LOC131006526 |
|---|---|
| GeneID | 131006526 |
| locus_tag | - |
| NCBI Name | LOC131006526 |
| 原始查询 | SmilChr01G000462 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os07g0681600; species=rice; confidence=high |
| 产物 | hit=Os07g0681600; species=rice; confidence=high |
| Arabidopsis | AT1G31360 (RECQL2)RECQ helicase L2 [Source:NCBI gene (formerly Entrezgene);Acc:840026] identity=33.8; qcov=0.748; evalue=1.31e-93; confidence=low |
| Rice | Os07g0681600- identity=52.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000724 (double-strand break repair via homologous recombination); GO:0003676 (nucleic acid binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0005737 (cytoplasm); GO:0006260 (DNA replication); GO:0006268 (GO:0006268); GO:0009378 (four-way junction helicase activity); GO:0043138 (3'-5' DNA helicase activity) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF00570 (HRDC); PF04851 (ResIII); PF09382 (RQC); PF14493 (HTH_40); PF16124 (RecQ_Zn_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789661.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057789661.1 |
| 3 | Nuclear body | 核内小体 | 0.40000 | XP_057789661.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789662.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789662.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:9462835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C19 |
Chr1:9463259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,D1 |
Chr1:9463577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr1:9463805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:9464290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B49,B50,D9 |
Chr1:9464835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:9464861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:9466061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C16 |
Chr1:9466829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr1:9466830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C27,C41 |
Chr1:9466874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C16 |
Chr1:9467259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,C26,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789661.1PF04851
ResIII 13-171 aa
PF00270
DEAD 15-176 aa
PF00271
Helicase_C 220-323 aa
PF16124
RecQ_Zn_bind 335-397 aa
PF09382
RQC 400-497 aa
PF00570
HRDC 545-611 aa
PF14493
HTH_40 652-745 aa
XP_057789662.1PF04851
ResIII 13-171 aa
PF00270
DEAD 15-176 aa
PF00271
Helicase_C 220-323 aa
PF16124
RecQ_Zn_bind 335-397 aa
PF09382
RQC 400-497 aa
PF00570
HRDC 545-611 aa
PF14493
HTH_40 652-745 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789661.1 |
Pfam | PF04851 |
ResIII | Family | 13 | 171 | 3.9e-08 | 34.1 | Type III restriction enzyme, res subunit |
XP_057789661.1 |
Pfam | PF00270 |
DEAD | Domain | 15 | 176 | 1.3e-25 | 90.8 | DEAD/DEAH box helicase |
XP_057789661.1 |
Pfam | PF00271 |
Helicase_C | Domain | 220 | 323 | 4.7e-23 | 82.2 | Helicase conserved C-terminal domain |
XP_057789661.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 335 | 397 | 3.8e-13 | 50.7 | RecQ zinc-binding |
XP_057789661.1 |
Pfam | PF09382 |
RQC | Domain | 400 | 497 | 6.2e-24 | 84.8 | RQC domain |
XP_057789661.1 |
Pfam | PF00570 |
HRDC | Domain | 545 | 611 | 2.1e-13 | 50.7 | HRDC domain |
XP_057789661.1 |
Pfam | PF14493 |
HTH_40 | Domain | 652 | 745 | 1.5e-16 | 61.1 | Helix-turn-helix domain |
XP_057789662.1 |
Pfam | PF04851 |
ResIII | Family | 13 | 171 | 3.8e-08 | 34.1 | Type III restriction enzyme, res subunit |
XP_057789662.1 |
Pfam | PF00270 |
DEAD | Domain | 15 | 176 | 1.3e-25 | 90.8 | DEAD/DEAH box helicase |
XP_057789662.1 |
Pfam | PF00271 |
Helicase_C | Domain | 220 | 323 | 4.5e-23 | 82.3 | Helicase conserved C-terminal domain |
XP_057789662.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 335 | 397 | 3.7e-13 | 50.7 | RecQ zinc-binding |
XP_057789662.1 |
Pfam | PF09382 |
RQC | Domain | 400 | 497 | 6e-24 | 84.8 | RQC domain |
XP_057789662.1 |
Pfam | PF00570 |
HRDC | Domain | 545 | 611 | 2e-13 | 50.8 | HRDC domain |
XP_057789662.1 |
Pfam | PF14493 |
HTH_40 | Domain | 652 | 745 | 1.5e-16 | 61.1 | Helix-turn-helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。