Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000526`

染色体: Chr01 坐标: 10710245-10727450 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000526`
名称	SmilChr01G000526
描述	R-linalool synthase, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	10710245 - 10727450 / `-`

ID 对照

NCBI Gene ID	`LOC131006577`
GeneID	`131006577`
locus_tag	`-`
NCBI Name	`LOC131006577`
原始查询	`SmilChr01G000526`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	R-linalool synthase, chloroplastic-like
产物	R-linalool synthase%2C chloroplastic-like
Arabidopsis	`AT4G16730` (TPS02) terpene synthase 02 [Source:NCBI gene (formerly Entrezgene);Acc:827376] identity=35.8; qcov=0.906; evalue=1.24e-93; confidence=medium
Rice	`Os02g0121700` (OsTPS3) - identity=34.3; qcov=0.818; evalue=5.84e-76; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131006577

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057789706.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057789706.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789705.1`
4	Nucleus	细胞核	0.00000	`XP_057789706.1`
5	Chromosome	染色体	0.00000	`XP_057789706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:10711943`	`T`	`TG`	1bp_insertion	frameshift_variant	125	A10,A11,A19,A2,A22,A23,A24,A3,A5,A9,B1,B10,B100,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B117,B118,B119,B120,B123,B125,B131,B133,B135,B137,B138,B139,B20,B22,B23,B25,B27,B28,B3,B30,B32,B33,B34,B35,B40,B41,B43,B44,B5,B51,B55,B56,B58,B59,B61,B62,B65,B66,B67,B69,B75,B77,B8,B85,B86,B90,B91,B92,B93,B95,B96,B98,C12,C14,C15,C17,C18,C2,C21,C23,C24,C25,C26,C3,C31,C34,C35,C36,C38,C39,C4,C40,C41,C44,C45,C47,C5,C50,C51,C53,C55,C57,C58,C60,C61,C62,C63,C64,C70,C71,C74,C75,C76,C78,C8,C84,C85,D3,D4,D7,D8,D9
`Chr1:10711948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr1:10711969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:10713121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B9,C44
`Chr1:10713223`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B24
`Chr1:10713223`	`TC`	`T`	1bp_deletion	CDS_variant	1	B24
`Chr1:10713227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr1:10722038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,C60,D7
`Chr1:10722226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:10722450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:10722468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C31
`Chr1:10723160`	`TG`	`T`	1bp_deletion	frameshift_variant	3	A5,B65,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789705.1

547 aa

274

547

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 65-191 aa PF03936 Terpene_synth_C 248-490 aa PF19086 Terpene_syn_C_2 288-490 aa

XP_057789706.1

488 aa

244

488

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 65-191 aa PF03936 Terpene_synth_C 248-450 aa PF19086 Terpene_syn_C_2 288-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789705.1`	Pfam	`PF01397`	Terpene_synth	Repeat	65	191	9.9e-38	130.4	Terpene synthase, N-terminal domain
`XP_057789705.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	248	490	6.8e-78	262.0	Terpene synthase family, metal binding domain
`XP_057789705.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	288	490	9.2e-50	169.9	Terpene synthase family 2, C-terminal metal binding
`XP_057789706.1`	Pfam	`PF01397`	Terpene_synth	Repeat	65	191	1.1e-37	130.3	Terpene synthase, N-terminal domain
`XP_057789706.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	248	450	9.3e-67	225.6	Terpene synthase family, metal binding domain
`XP_057789706.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	288	448	1.7e-38	133.1	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933722.1
TAAGGACCACCATATTATCAATGTCACAAGCATCGTATCGCTTCCCAAAAACCTCAATTCCATGGCAAACAAGGGTTTGCCCCGCCGCCGCTCTTCTCCGCCGCTTCTCCATTTGCAAGTCCACAGCGACAACATCACCAACTTCACCTCTCGTCATCAATGGGACCGGCGCTCTGCAGCTTCAAACAATGGAGGGAAGCAAGAGGAGAGAATTTTTGGTAGAGAAGAGTGCAGAAAAATTGCGGACAAGCAAAGAGAAA...

XM_057933723.1
TAAGGACCACCATATTATCAATGTCACAAGCATCGTATCGCTTCCCAAAAACCTCAATTCCATGGCAAACAAGGGTTTGCCCCGCCGCCGCTCTTCTCCGCCGCTTCTCCATTTGCAAGTCCACAGCGACAACATCACCAACTTCACCTCTCGTCATCAATGGGACCGGCGCTCTGCAGCTTCAAACAATGGAGGGAAGCAAGAGGAGAGAATTTTTGGTAGAGAAGAGTGCAGAAAAATTGCGGACAAGCAAAGAGAAA...

CDS

2 records

下载 CDS FASTA

LOC131006577
ATGTCACAAGCATCGTATCGCTTCCCAAAAACCTCAATTCCATGGCAAACAAGGGTTTGCCCCGCCGCCGCTCTTCTCCGCCGCTTCTCCATTTGCAAGTCCACAGCGACAACATCACCAACTTCACCTCTCGTCATCAATGGGACCGGCGCTCTGCAGCTTCAAACAATGGAGGGAAGCAAGAGGAGAGAATTTTTGGTAGAGAAGAGTGCAGAAAAATTGCGGACAAGCAAAGAGAAACTCAAACTTATCGACCACAT...

Protein

2 records

下载 Protein FASTA

XP_057789705.1
MSQASYRFPKTSIPWQTRVCPAAALLRRFSICKSTATTSPTSPLVINGTGALQLQTMEGSKRREFLVEKSAEKLRTSKEKLKLIDHIQRLGIDYYFEDMIDAILQLECFAFSPQEDLFTTALRFRLLRQAGFHITTDVLLKFKGKDGKFEESLSEGMEGLVSLYEAANMGAQGEKILDEAMEFAVPRLQALEVPRHLRMGRLEARRFIDEYGKQSEHDRDLLELAILEYNHVQAQHQAELTEITRWWKQLGLVDKLGFGR...

XP_057789706.1
MSQASYRFPKTSIPWQTRVCPAAALLRRFSICKSTATTSPTSPLVINGTGALQLQTMEGSKRREFLVEKSAEKLRTSKEKLKLIDHIQRLGIDYYFEDMIDAILQLECFAFSPQEDLFTTALRFRLLRQAGFHITTDVLLKFKGKDGKFEESLSEGMEGLVSLYEAANMGAQGEKILDEAMEFAVPRLQALEVPRHLRMGRLEARRFIDEYGKQSEHDRDLLELAILEYNHVQAQHQAELTEITRWWKQLGLVDKLGFGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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