Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000551`

染色体: Chr01 坐标: 11464915-11488037 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000551`
名称	SmilChr01G000551
描述	uncharacterized SmilChr01G000551
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	11464915 - 11488037 / `+`

ID 对照

NCBI Gene ID	`LOC131006598`
GeneID	`131006598`
locus_tag	`-`
NCBI Name	`LOC131006598`
原始查询	`SmilChr01G000551`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak
产物	aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G06105` (AT2G06105) aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=34.6; qcov=0.148; evalue=2.36e-08; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF13650 (Asp_protease_2)
InterPro	-
eggNOG	-
NR	GeneID:131006598

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789740.1`
2	Nucleus	细胞核	0.60000	`XP_057789740.1`
3	Cytosol	细胞质基质	0.40000	`XP_057789740.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057789740.1`
5	Chromosome	染色体	0.00000	`XP_057789740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:11469080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:11469094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B94,D3
`Chr1:11469095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B135,B86,C46,C8
`Chr1:11469105`	`G`	`GTA`	2bp_insertion	frameshift_variant	5	A20,B135,B86,C46,C8
`Chr1:11469105`	`G`	`GTA`	2bp_insertion	CDS_variant	5	A20,B135,B86,C46,C8
`Chr1:11469106`	`ATC`	`A`	2bp_deletion	frameshift_variant	5	A20,B135,B86,C46,C8
`Chr1:11469106`	`ATC`	`A`	2bp_deletion	CDS_variant	5	A20,B135,B86,C46,C8
`Chr1:11469140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:11469143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:11469173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:11469174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B117
`Chr1:11469213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B119,B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789740.1

528 aa

264

528

Asp_protease_2

PF13650 Asp_protease_2 394-485 aa

XP_057789741.1

528 aa

264

528

Asp_protease_2

PF13650 Asp_protease_2 394-485 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789740.1`	Pfam	`PF13650`	Asp_protease_2	Domain	394	485	2e-06	29.1	Aspartyl protease
`XP_057789741.1`	Pfam	`PF13650`	Asp_protease_2	Domain	394	485	2e-06	29.1	Aspartyl protease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009095623.1
ATTAAACAAAATCATTTTCTCTCTCTTCCTCCCCTCTCATTTTCGTCCATTTCTCTCTCCCTCTCTACTCTCACTATTTTCTTTTCAATCCATCATGGAAGAACACTCCAAAGCTTCTAAACACATAGATCCACCATCACCATTCCTAGAGCTAGCCTTCAATCACCAAGAATCAAGAGAATGATCAAGCTAGAGTTTCCAAACCAAAGTGGATCAAAGAGTTCGCCATTTTCTTAAATATTGAGGGTCCGGGCGACAGG...

XM_057933757.1
GACCAAGTTTAGCATTAAACAAAATCATTTTCTCTCTCTTCCTCCCCTCTCATTTTCGTCCATTTCTCTCTCCCTCTCTACTCTCACTATTTTCTTTTCAATCCATCATGGAAGAACACTCCAAAGCTTCTAAACACATAGATCCACCATCACCATTCCTAGAGCTAGCCTTCAATCACCAAGAATCAAGAGAATGATCAAGCTAGAGTTTCCAAACCAAAGTGGATCAAAGAGTTCGCCATTTTCTTAAATATTGAGGG...

CDS

2 records

下载 CDS FASTA

LOC131006598
ATGGCTTCTACGAGCTACCAATGGCCATCTAAGCGAATACAATTGAAGAAGCTTGCAGCTGCGTCCAATTCTGATCCTATTGCAGCAATGGTTACTCAACAAGCAGCGATGGCTACACAGCAGACAGCGATGGCTACACAGCTGGCAGAGTTGACTACGAAACTTGGTGAGTTGAATGTTGGACGTCTTGAGCAAGCTGTGATAGACCCGTCAGGCATGGTAGATGTCAATTATGTTAATGACAGAAACTATGAGAATTT...

Protein

2 records

下载 Protein FASTA

XP_057789740.1
MASTSYQWPSKRIQLKKLAAASNSDPIAAMVTQQAAMATQQTAMATQLAELTTKLGELNVGRLEQAVIDPSGMVDVNYVNDRNYENFQRGQPGMYSRGQQYQQGQQQFQPGARPHPNLSYGNPNNALQPPPGFSVSSGGVINEPKKGLLEDMMQQVLTEVSSMKTTVNTRMTNLESQVGHIGNNFSALSKQVHILETQVGQMANQAAAQHKSGQFPSNTTVNSKGQCNSIFDGTLSPKDRRMSKENDQPSEEPYKAPIPL...

XP_057789741.1
MASTSYQWPSKRIQLKKLAAASNSDPIAAMVTQQAAMATQQTAMATQLAELTTKLGELNVGRLEQAVIDPSGMVDVNYVNDRNYENFQRGQPGMYSRGQQYQQGQQQFQPGARPHPNLSYGNPNNALQPPPGFSVSSGGVINEPKKGLLEDMMQQVLTEVSSMKTTVNTRMTNLESQVGHIGNNFSALSKQVHILETQVGQMANQAAAQHKSGQFPSNTTVNSKGQCNSIFDGTLSPKDRRMSKENDQPSEEPYKAPIPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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