Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000556`

染色体: Chr01 坐标: 11608559-11615590 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000556`
名称	SmilChr01G000556
描述	uncharacterized SmilChr01G000556
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	11608559 - 11615590 / `+`

ID 对照

NCBI Gene ID	`LOC131006597`
GeneID	`131006597`
locus_tag	`-`
NCBI Name	`LOC131006597`
原始查询	`SmilChr01G000556`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325]; symbol=AT3G51620; hit=AT3G51620; species=arabidopsis; confidence=low
产物	PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325]; symbol=AT3G51620; hit=AT3G51620; species=arabidopsis; confidence=low
Arabidopsis	`AT3G51620` (AT3G51620) PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325] identity=63.7; qcov=0.424; evalue=9.03e-157; confidence=low
Rice	`Os11g0114700` (OsNTP11) - identity=55.9; qcov=0.441; evalue=9.31e-135; confidence=low
GO	-
KEGG	-
Pfam	PF22600 (MTPAP-like_central); PF26180 (PAP-OAS1)
InterPro	-
eggNOG	-
NR	GeneID:131006597

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789737.1`
2	Nucleus	细胞核	0.60000	`XP_057789737.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057789737.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057789737.1`
5	P-body	P-body	0.20000	`XP_057789737.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:11611638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B129,C11,C69
`Chr1:11612263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C45
`Chr1:11612291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:11612361`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B13
`Chr1:11612361`	`GA`	`G`	1bp_deletion	CDS_variant	1	B13
`Chr1:11612382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B9,C44
`Chr1:11613828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr1:11614115`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B47
`Chr1:11614115`	`T`	`TA`	1bp_insertion	CDS_variant	1	B47
`Chr1:11614166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B11,C27,C41
`Chr1:11614323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B110,B50,C37,C50
`Chr1:11614325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B138

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789737.1

833 aa

416

833

MTPAP-like_central

PAP-OAS1

PF22600 MTPAP-like_central 40-160 aa PF26180 PAP-OAS1 172-363 aa

XP_057789738.1

833 aa

416

833

MTPAP-like_central

PAP-OAS1

PF22600 MTPAP-like_central 40-160 aa PF26180 PAP-OAS1 172-363 aa

XP_057789739.1

832 aa

416

832

MTPAP-like_central

PAP-OAS1

PF22600 MTPAP-like_central 40-160 aa PF26180 PAP-OAS1 172-363 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789737.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	40	160	2.1e-07	31.9	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057789737.1`	Pfam	`PF26180`	PAP-OAS1	Domain	172	363	4.4e-95	317.7	PAP/OAS1 substrate-binding domain
`XP_057789738.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	40	160	2.1e-07	31.9	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057789738.1`	Pfam	`PF26180`	PAP-OAS1	Domain	172	363	4.4e-95	317.7	PAP/OAS1 substrate-binding domain
`XP_057789739.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	40	160	2.1e-07	31.9	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057789739.1`	Pfam	`PF26180`	PAP-OAS1	Domain	172	363	4.4e-95	317.7	PAP/OAS1 substrate-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933754.1
ATATTATTTGCACATTCATTCTATCTTAATCCGATTCCTCTCGCTCTGCCGCGGCACAAACTAGATAATTTCGCCATTAAAATAATTGACCAAACGAAAATCCCCATCTATACATACACCAACAATATATATAGAGTCTCTCAAAAAAAAAAAAAAACAATATATATAGAGAAAGGGAGGGATTGTGTGTGTGAGTGTGAAAGGACAAGCTGAAGATATAGCAGAAGGGGTTTTGTTTCATTTTGCAAATAACTGAATGA...

XM_057933755.1
AATCCGATTCCTCTCGCTCTGCCGCGGCACAAACTAGATAATTTCGCCATTAAAATAATTGACCAAACGAAAATCCCCATCTATACATACACCAACAATATATATAGAGTCTCTCAAAAAAAAAAAAAAACAATATATATAGAGAAAGGGAGGGATTGTGTGTGTGAGTGTGAAAGGACAAGCTGAAGATATAGCAGAAGGGGTTTTGTTTCATTTTGCAAATAACTGAATGAGAGTTGGAAGAAGACCAAGACGAAGAC...

CDS

3 records

下载 CDS FASTA

LOC131006597
ATGGGTGAGCTCGGTGTGGGGCATTCGAAAGATTCCGGTTTGGGGCGGAAGTCTTCTGCGCCGCCTGATCCGGCTTCTTTGAGGGAGGAGTGTTTGTCGGCGGCGGAGGAGGCCGCCCAGCAAGTGCTGAATTGCATTCATCCTACACTCGACTCGGAAGAGGAGAGAAGAGACATCATTGATTATATGCAGAGACTCATCAAAAGCCATCTTAATTGTGAGGTGTTTCCCTATGGGTCTGTGCCACTCAAGACATACTT...

Protein

3 records

下载 Protein FASTA

XP_057789737.1
MGELGVGHSKDSGLGRKSSAPPDPASLREECLSAAEEAAQQVLNCIHPTLDSEEERRDIIDYMQRLIKSHLNCEVFPYGSVPLKTYLPDGDIDLTAINGTNADESLACDVLSLLRKEEKNVNAEFKVKDTQYIDAEVKLVKCLVRNTVIDISFNQLGGLSTLCFLEQVDRLVGRNHLVKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLYHASLCGPLAVLHRFLEYYSKFDWEKYCISLKGPVCKSSLLD...

XP_057789738.1
MGELGVGHSKDSGLGRKSSAPPDPASLREECLSAAEEAAQQVLNCIHPTLDSEEERRDIIDYMQRLIKSHLNCEVFPYGSVPLKTYLPDGDIDLTAINGTNADESLACDVLSLLRKEEKNVNAEFKVKDTQYIDAEVKLVKCLVRNTVIDISFNQLGGLSTLCFLEQVDRLVGRNHLVKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLYHASLCGPLAVLHRFLEYYSKFDWEKYCISLKGPVCKSSLLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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