当前解析结果
SmilChr01G000584| 统一新 Gene ID | SmilChr01G000584 |
|---|---|
| 名称 | SmilChr01G000584 |
| 描述 | exocyst complex component EXO70B1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 12599471 - 12601386 / - |
| NCBI Gene ID | LOC131006619 |
|---|---|
| GeneID | 131006619 |
| locus_tag | - |
| NCBI Name | LOC131006619 |
| 原始查询 | SmilChr01G000584 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70B1-like |
| 产物 | exocyst complex component EXO70B1-like |
| Arabidopsis | AT5G58430 (EXO70B1)exocyst subunit exo70 family protein B1 [Source:NCBI gene (formerly Entrezgene);Acc:835956] identity=59.6; qcov=1.06; evalue=0; confidence=high |
| Rice | Os01g0827500 (OsEXO70B1)- identity=42.9; qcov=1.1; evalue=0; confidence=medium |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006619 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057789779.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057789779.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057789779.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789779.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789779.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:12599629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B15,C20,D1 |
Chr1:12600133 |
CTG |
C |
2bp_deletion | frameshift_variant | 64 | A11,A2,B100,B102,B104,B108,B11,B111,B113,B125,B130,B138,B139,B14,B2,B25,B27,B3,B32,B34,B37,B4,B41,B45,B46,B53,B54,B55,B58,B65,B66,B68,B72,B82,B93,B95,B97,C12,C15,C17,C19,C2,C23,C25,C26,C28,C3,C31,C34,C35,C38,C47,C5,C60,C66,C70,C74,C75,C79,C80,C82,C85,D10,D8 |
Chr1:12600169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B82,C12,C60 |
Chr1:12600243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B18,C31,C33,C57,C64 |
Chr1:12600348 |
TA |
T |
1bp_deletion | frameshift_variant | 40 | A1,A10,A25,A5,A7,A8,B102,B103,B110,B12,B134,B139,B14,B18,B19,B25,B29,B3,B37,B39,B50,B55,B60,B69,B7,B71,B76,B79,B86,B92,C20,C28,C37,C40,C47,C57,C60,C62,C75,C78 |
Chr1:12600377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C22,C77 |
Chr1:12600435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr1:12600437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:12600471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B3,B37,B44,C75 |
Chr1:12600485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:12600553 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 3 | B29,B86,C38 |
Chr1:12600553 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B29,B86,C38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789779.1PF20669
Exo70_N 54-127 aa
PF03081
Exo70_C 239-586 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789779.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 54 | 127 | 6.4e-10 | 39.9 | Exocyst complex component Exo70 N-terminal |
XP_057789779.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 239 | 586 | 5.5e-118 | 395.0 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。