Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000609`

染色体: Chr01 坐标: 13460631-13463099 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000609`
名称	SmilChr01G000609
描述	uncharacterized SmilChr01G000609
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	13460631 - 13463099 / `-`

ID 对照

NCBI Gene ID	`LOC131006640`
GeneID	`131006640`
locus_tag	`-`
NCBI Name	`LOC131006640`
原始查询	`SmilChr01G000609`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:817568]; symbol=AT2G30160; hit=AT2G30160; species=arabidopsis; confidence=high
产物	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:817568]; symbol=AT2G30160; hit=AT2G30160; species=arabidopsis; confidence=high
Arabidopsis	`AT2G30160` (AT2G30160) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:817568] identity=69.9; qcov=0.994; evalue=7.4e-164; confidence=high
Rice	`Os03g0296800` (MIT) - identity=67; qcov=0.943; evalue=5.16e-130; confidence=high
GO	GO:0015093 (ferrous iron transmembrane transporter activity); GO:0031966 (mitochondrial membrane); GO:0048250 (iron import into the mitochondrion)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131006640

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057789793.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057789793.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057789793.1`
4	Nucleus	细胞核	0.00000	`XP_057789793.1`
5	Chromosome	染色体	0.00000	`XP_057789793.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:13462252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:13462380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:13462556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B138
`Chr1:13462593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789793.1

331 aa

166

331

Mito_carr

PF00153 Mito_carr 35-124 aa PF00153 Mito_carr 130-216 aa PF00153 Mito_carr 227-320 aa

XP_057789794.1

331 aa

166

331

Mito_carr

PF00153 Mito_carr 35-124 aa PF00153 Mito_carr 130-216 aa PF00153 Mito_carr 227-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789793.1`	Pfam	`PF00153`	Mito_carr	Repeat	35	124	1.5e-73	243.3	Mitochondrial carrier protein
`XP_057789793.1`	Pfam	`PF00153`	Mito_carr	Repeat	130	216	1.5e-73	243.3	Mitochondrial carrier protein
`XP_057789793.1`	Pfam	`PF00153`	Mito_carr	Repeat	227	320	1.5e-73	243.3	Mitochondrial carrier protein
`XP_057789794.1`	Pfam	`PF00153`	Mito_carr	Repeat	35	124	1.5e-73	243.3	Mitochondrial carrier protein
`XP_057789794.1`	Pfam	`PF00153`	Mito_carr	Repeat	130	216	1.5e-73	243.3	Mitochondrial carrier protein
`XP_057789794.1`	Pfam	`PF00153`	Mito_carr	Repeat	227	320	1.5e-73	243.3	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933811.1
ATTACAGAAAGTGAGATATTTGATTTAAAGGATAGAGATTAGAGAGTGATGAGCGTGCTGAGATCGTTCACTTCTTTTCTCAGACAAAATCAGTGCTGCGGAATTTTCAGCGCCCAATTGCGATAAAGCTTGAATTTTCATATATCCATCAACAAACTAGATTATTTAATTTTACCAATTCCCATTTAATTACGACGCCCCAATTTGTTGGAAGTTGAAACCCTAGTTTTGAACTTTCCGTTTTCGAAGACCTCTCTCTA...

XM_057933810.1
GAATCTAACCGAATTATTCACCCTTCGATAAAAAAGGATTTAAAGGATAGAGATTAGAGAGTGATGAGCGTGCTGAGATCGTTCACTTCTTTTCTCAGACAAAATCAGTGCTGCGGAATTTTCAGCGCCCAATTGCGATAAAGCTTGAATTTTCATATATCCATCAACAAACTAGATTATTTAATTTTACCAATTCCCATTTAATTACGACGCCCCAATTTGTTGGAAGTTGAAACCCTAGTTTTGAACTTTCCGTTTTC...

CDS

2 records

下载 CDS FASTA

LOC131006640
ATGGCCACCGACGCCTCCCCGAAATTTCAGCAAACGGAGCTGATCCCCGTGCCGCCGCAGCCCGATTACAGCTCGGCAGTCGCCGGCGTCGAGCACGACGGGCTCCATTTTTGGCAGTTCATGATCGCCGGCTCCGTCGCCGGCATGGTGGAGCACATGGCCATGTTCCCCGTCGACACCATCAAAACCCAAATGCAAGCCCTAGGTTCCTGCCCCATCAAGTCCGCCAGCGTTAAGCAAGCCGTGCAGTCAATTATGAA...

Protein

2 records

下载 Protein FASTA

XP_057789793.1
MATDASPKFQQTELIPVPPQPDYSSAVAGVEHDGLHFWQFMIAGSVAGMVEHMAMFPVDTIKTQMQALGSCPIKSASVKQAVQSIMKTDGARGLYRGIGAMALGAGPAHAAYFSVYEICKKSFSGGNPDNHMAHAASGVCATIASDAVLTPMDMVKQRLQLGNSPYKGVWDCVSRVLRQDGFWAFYASYRTTVLMNAPFTALHFATYEAAKRGLTEVSHSPESLSDETLIVHATAGAAAGALAAALTTPLDVVKTQLQCQ...

XP_057789794.1
MATDASPKFQQTELIPVPPQPDYSSAVAGVEHDGLHFWQFMIAGSVAGMVEHMAMFPVDTIKTQMQALGSCPIKSASVKQAVQSIMKTDGARGLYRGIGAMALGAGPAHAAYFSVYEICKKSFSGGNPDNHMAHAASGVCATIASDAVLTPMDMVKQRLQLGNSPYKGVWDCVSRVLRQDGFWAFYASYRTTVLMNAPFTALHFATYEAAKRGLTEVSHSPESLSDETLIVHATAGAAAGALAAALTTPLDVVKTQLQCQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器