当前解析结果
SmilChr01G000637| 统一新 Gene ID | SmilChr01G000637 |
|---|---|
| 名称 | SmilChr01G000637 |
| 描述 | CBL-interacting serine/threonine-protein kinase 11-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 14312742 - 14314457 / + |
| NCBI Gene ID | LOC131006664 |
|---|---|
| GeneID | 131006664 |
| locus_tag | - |
| NCBI Name | LOC131006664 |
| 原始查询 | SmilChr01G000637 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 11-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 11-like |
| Arabidopsis | AT2G30360 (SIP4)SOS3-interacting protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:817586] identity=57.5; qcov=1; evalue=1.96e-173; confidence=high |
| Rice | Os01g0206700 (OsCIPK05)- identity=52.4; qcov=0.993; evalue=6.8e-146; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006664 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789808.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057789808.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057789808.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057789808.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789808.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:14313031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B68,C85 |
Chr1:14313223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B133 |
Chr1:14313241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:14313300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B110,B16,B88,C22 |
Chr1:14313421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr1:14313461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:14313712 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | B31,B59,B78,C14,C32,C4,C55,C64,C72,C9 |
Chr1:14313762 |
T |
TCG |
2bp_insertion | frameshift_variant | 4 | B128,B84,C17,C42 |
Chr1:14313762 |
T |
TCG |
2bp_insertion | CDS_variant | 4 | B128,B84,C17,C42 |
Chr1:14313823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B138,C3,D8 |
Chr1:14313889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B71,B87,C13,D11 |
Chr1:14313907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B87,C41,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789808.1PF00069
Pkinase 17-272 aa
PF07714
PK_Tyr_Ser-Thr 18-268 aa
PF14531
Kinase-like 123-260 aa
PF03822
NAF 296-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789808.1 |
Pfam | PF00069 |
Pkinase | Domain | 17 | 272 | 1.8e-72 | 244.6 | Protein kinase domain |
XP_057789808.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 268 | 1.2e-37 | 130.3 | Protein tyrosine and serine/threonine kinase |
XP_057789808.1 |
Pfam | PF14531 |
Kinase-like | Family | 123 | 260 | 2.7e-12 | 47.2 | Kinase-like |
XP_057789808.1 |
Pfam | PF03822 |
NAF | Domain | 296 | 354 | 1.4e-18 | 67.4 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。