Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000637

染色体: Chr01 坐标: 14312742-14314457 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000637
名称SmilChr01G000637
描述CBL-interacting serine/threonine-protein kinase 11-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向14312742 - 14314457 / +

ID 对照

NCBI Gene IDLOC131006664
GeneID131006664
locus_tag-
NCBI NameLOC131006664
原始查询SmilChr01G000637

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述CBL-interacting serine/threonine-protein kinase 11-like
产物CBL-interacting serine/threonine-protein kinase 11-like
ArabidopsisAT2G30360 (SIP4)
SOS3-interacting protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:817586]
identity=57.5; qcov=1; evalue=1.96e-173; confidence=high
RiceOs01g0206700 (OsCIPK05)
-
identity=52.4; qcov=0.993; evalue=6.8e-146; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like)
InterPro-
eggNOG-
NRGeneID:131006664

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057789808.1
2 Cytoplasm 细胞质 0.60000 XP_057789808.1
3 Nucleus 细胞核 0.40000 XP_057789808.1
4 Cell membrane 细胞膜 0.20000 XP_057789808.1
5 Chromosome 染色体 0.00000 XP_057789808.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:14313031 C T EMS_canonical_SNV CDS_variant 3 B24,B68,C85
Chr1:14313223 C T EMS_canonical_SNV CDS_variant 2 A8,B133
Chr1:14313241 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:14313300 G A EMS_canonical_SNV CDS_variant 5 A18,B110,B16,B88,C22
Chr1:14313421 C T EMS_canonical_SNV CDS_variant 1 A8
Chr1:14313461 G A EMS_canonical_SNV CDS_variant 1 B65
Chr1:14313712 C CA 1bp_insertion frameshift_variant 10 B31,B59,B78,C14,C32,C4,C55,C64,C72,C9
Chr1:14313762 T TCG 2bp_insertion frameshift_variant 4 B128,B84,C17,C42
Chr1:14313762 T TCG 2bp_insertion CDS_variant 4 B128,B84,C17,C42
Chr1:14313823 G A EMS_canonical_SNV CDS_variant 4 A20,B138,C3,D8
Chr1:14313889 C T EMS_canonical_SNV CDS_variant 4 B71,B87,C13,D11
Chr1:14313907 G A EMS_canonical_SNV CDS_variant 3 B87,C41,C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057789808.1
417 aa
N
1
208
417
Pkinase
PK_Tyr_Ser-Thr
Kinase-like
NAF
C
PF00069 Pkinase 17-272 aa PF07714 PK_Tyr_Ser-Thr 18-268 aa PF14531 Kinase-like 123-260 aa PF03822 NAF 296-354 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789808.1 Pfam PF00069 Pkinase Domain 17 272 1.8e-72 244.6 Protein kinase domain
XP_057789808.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 18 268 1.2e-37 130.3 Protein tyrosine and serine/threonine kinase
XP_057789808.1 Pfam PF14531 Kinase-like Family 123 260 2.7e-12 47.2 Kinase-like
XP_057789808.1 Pfam PF03822 NAF Domain 296 354 1.4e-18 67.4 NAF domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057933825.1
AGAGAAGAAGGGGTGTGAAGCAGAAGAAAGGCCGCGAAAAACTCAGAACCTCTAATCCCATCCCCTCTTTGTCTCTAAATAAGCAGACATAAACGAAGGCATCAACCCATCCTCTTCCTTCGTTCTTTCCCGGCAAATTTCTCCGCCAAACATCTCAAAAATTATTTGAATCTCCTCTTCCTCCCAAGAGGCCTCGGGGCTTTCCCATGACGGCCGCTATGGCTGTGTCGTCGGAAAGCGCACTCTTCCAAAAATACGAG...

CDS

1 records

下载 CDS FASTA
LOC131006664
ATGACGGCCGCTATGGCTGTGTCGTCGGAAAGCGCACTCTTCCAAAAATACGAGCTTGGCCGTCTCCTCGGCTGCGGCGCCTTCGCCAAAGTGTATCTAGCCAGGGACGTGGCCACCGGCCAGGACGTCGCCATCAAGGTCATCCACAAGAGCAGGCTCAAAAACGACGCCAATCTCATCGCCAACATCAAGCGCGAGATCTCCATCATGAGCAAGCTCAGCCACCCCCACACCGTCCGCCTCTTCGAGGTCCTCGCCAC...

Protein

1 records

下载 Protein FASTA
XP_057789808.1
MTAAMAVSSESALFQKYELGRLLGCGAFAKVYLARDVATGQDVAIKVIHKSRLKNDANLIANIKREISIMSKLSHPHTVRLFEVLATRNIIYIVLEYVRGGELFAKVAKGRFSEPLCRKYFQQLIAVVSYCHSRGIYHRDLKPENLLLDEKENLKVSDFGLSALREQVHADGLLHTLCGTPAYVAPEILAKRGYDGAKIDVWSCGVILFVLAAGYLPFNDPNLMNMYRKIYKGEFRCPKWMSPSLKRLLSRLLDTNPNTR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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