当前解析结果
SmilChr01G000683| 统一新 Gene ID | SmilChr01G000683 |
|---|---|
| 名称 | SmilChr01G000683 |
| 描述 | uncharacterized SmilChr01G000683 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 15178556 - 15197387 / - |
| NCBI Gene ID | LOC131025929 |
|---|---|
| GeneID | 131025929 |
| locus_tag | - |
| NCBI Name | LOC131025929 |
| 原始查询 | SmilChr01G000683 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.6; qcov=0.075; evalue=2.42e-24; confidence=weak |
| Rice | Os04g0191000- identity=41.5; qcov=0.359; evalue=7.6e-128; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF24626 (SH3_Tf2-1); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025929 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811708.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811708.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057811708.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811708.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811708.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:15178694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr1:15178705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr1:15178759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr1:15178790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr1:15178800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr1:15178803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:15178814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:15178853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr1:15178864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,B81 |
Chr1:15178872 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D2 |
Chr1:15178872 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D2 |
Chr1:15178892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811708.1PF03732
PEG10_N-capsid 1-82 aa
PF30901
PEG10-RTL1_C-capsid 92-165 aa
PF00098
zf-CCHC 238-255 aa
PF00078
RVT_1 589-745 aa
PF17919
RT_RNaseH_2 810-904 aa
PF17917
RT_RNaseH 835-934 aa
PF17921
Integrase_H2C2 1015-1072 aa
PF24626
SH3_Tf2-1 1185-1231 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811708.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 1 | 82 | 6.5e-19 | 68.8 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057811708.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 92 | 165 | 4.2e-08 | 33.8 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057811708.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 238 | 255 | 0.0002 | 22.0 | Zinc knuckle |
XP_057811708.1 |
Pfam | PF00078 |
RVT_1 | Domain | 589 | 745 | 1.9e-38 | 133.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811708.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 810 | 904 | 2.2e-31 | 108.6 | RNase H-like domain found in reverse transcriptase |
XP_057811708.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 835 | 934 | 3.5e-34 | 117.8 | RNase H-like domain found in reverse transcriptase |
XP_057811708.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1015 | 1072 | 4.6e-17 | 62.6 | Integrase zinc binding domain |
XP_057811708.1 |
Pfam | PF24626 |
SH3_Tf2-1 | Domain | 1185 | 1231 | 7.3e-16 | 58.8 | Tf2-1-like, SH3 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。