当前解析结果
SmilChr01G000729| 统一新 Gene ID | SmilChr01G000729 |
|---|---|
| 名称 | SmilChr01G000729 |
| 描述 | sugar transport protein 8-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16225477 - 16227754 / + |
| NCBI Gene ID | LOC131006745 |
|---|---|
| GeneID | 131006745 |
| locus_tag | - |
| NCBI Name | LOC131006745 |
| 原始查询 | SmilChr01G000729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar transport protein 8-like |
| 产物 | sugar transport protein 8-like |
| Arabidopsis | AT5G26250 (AT5G26250)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832694] identity=60.7; qcov=0.972; evalue=0; confidence=high |
| Rice | Os03g0218400 (OsMST4)- identity=58.4; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789852.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789852.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789852.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789852.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789852.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16225638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:16225647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:16225932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B44,B58,C51,C74 |
Chr1:16225986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B66,B93 |
Chr1:16226109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,C31 |
Chr1:16226647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:16226734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B44,B58,C51,C74 |
Chr1:16226948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:16227083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:16227182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,C25,C35,C61,C8 |
Chr1:16227202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B64,C33 |
Chr1:16227357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789852.1PF00083
Sugar_tr 27-484 aa
PF07690
MFS_1 59-429 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789852.1 |
Pfam | PF00083 |
Sugar_tr | Family | 27 | 484 | 2.9e-122 | 409.5 | Sugar (and other) transporter |
XP_057789852.1 |
Pfam | PF07690 |
MFS_1 | Family | 59 | 429 | 8.8e-24 | 84.8 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。