Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000739`

染色体: Chr01 坐标: 16373664-16393722 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000739`
名称	SmilChr01G000739
描述	DExH-box ATP-dependent RNA helicase DExH11
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	16373664 - 16393722 / `+`

ID 对照

NCBI Gene ID	`LOC131006754`
GeneID	`131006754`
locus_tag	`-`
NCBI Name	`LOC131006754`
原始查询	`SmilChr01G000739`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH11
产物	DExH-box ATP-dependent RNA helicase DExH11
Arabidopsis	`AT3G46960` (AT3G46960) RNA helicase, ATP-dependent, SK12/DOB1 protein [Source:NCBI gene (formerly Entrezgene);Acc:823849] identity=65.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os11g0176200` (OsDSHCT) - identity=39.9; qcov=0.534; evalue=4.64e-127; confidence=medium
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0055087 (Ski complex); GO:0070478 (nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF08148 (DSHCT); PF13234 (MTR4_beta-barrel); PF17911 (Ski2_N); PF21408 (MTR4-like_stalk)
InterPro	-
eggNOG	-
NR	GeneID:131006754

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789861.1`
2	Cytoplasm	细胞质	0.60000	`XP_057789861.1`
3	Cytosol	细胞质基质	0.60000	`XP_057789861.1`
4	Chromosome	染色体	0.00000	`XP_057789861.1`
5	Centromere	着丝粒	0.00000	`XP_057789861.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:16376154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B44,B58,C51,C74
`Chr1:16376318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B6,D3
`Chr1:16376342`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	B100
`Chr1:16376342`	`TTC`	`T`	2bp_deletion	CDS_variant	1	B100
`Chr1:16376346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:16376557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B6,D3
`Chr1:16376816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B6,D3
`Chr1:16377432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B98,C11,C69
`Chr1:16381002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B139
`Chr1:16386044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B44,B58,C51,C74
`Chr1:16388365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr1:16389276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789861.1

1348 aa

674

1348

Ski2_N

DEAD

Helicase_C

MTR4-like_stalk

MTR4_beta-barrel

DSHCT

PF17911 Ski2_N 131-216 aa PF00270 DEAD 365-513 aa PF00271 Helicase_C 717-794 aa PF21408 MTR4-like_stalk 849-913 aa PF13234 MTR4_beta-barrel 917-1144 aa PF08148 DSHCT 1170-1340 aa

XP_057789862.1

1089 aa

544

1089

Ski2_N

DEAD

Helicase_C

MTR4-like_stalk

MTR4_beta-barrel

PF17911 Ski2_N 131-216 aa PF00270 DEAD 365-513 aa PF00271 Helicase_C 717-794 aa PF21408 MTR4-like_stalk 849-913 aa PF13234 MTR4_beta-barrel 917-1085 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789861.1`	Pfam	`PF17911`	Ski2_N	Domain	131	216	2.2e-08	34.6	Ski2 N-terminal region
`XP_057789861.1`	Pfam	`PF00270`	DEAD	Domain	365	513	6e-23	82.1	DEAD/DEAH box helicase
`XP_057789861.1`	Pfam	`PF00271`	Helicase_C	Domain	717	794	1.3e-06	29.3	Helicase conserved C-terminal domain
`XP_057789861.1`	Pfam	`PF21408`	MTR4-like_stalk	Domain	849	913	1.5e-10	41.9	Exosome RNA helicase MTR4-like, stalk
`XP_057789861.1`	Pfam	`PF13234`	MTR4_beta-barrel	Domain	917	1144	1.8e-22	81.3	Mtr4-like, beta-barrel domain
`XP_057789861.1`	Pfam	`PF08148`	DSHCT	Domain	1170	1340	2.9e-60	203.7	DSHCT (NUC185) domain
`XP_057789862.1`	Pfam	`PF17911`	Ski2_N	Domain	131	216	1.8e-08	34.9	Ski2 N-terminal region
`XP_057789862.1`	Pfam	`PF00270`	DEAD	Domain	365	513	4.3e-23	82.6	DEAD/DEAH box helicase
`XP_057789862.1`	Pfam	`PF00271`	Helicase_C	Domain	717	794	1.3e-06	29.4	Helicase conserved C-terminal domain
`XP_057789862.1`	Pfam	`PF21408`	MTR4-like_stalk	Domain	849	913	1.1e-10	42.3	Exosome RNA helicase MTR4-like, stalk
`XP_057789862.1`	Pfam	`PF13234`	MTR4_beta-barrel	Domain	917	1085	9.9e-09	36.4	Mtr4-like, beta-barrel domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933878.1
ACCAGTTCCAATAATTTATTCTGACAAATCTGCCCCGGGGTTATTGTTGTGGGTTTTGCACTTCCTTGTGCGCCATTACTTGAATTCACCACTGCCAAAGTTGGAGCTCTGCTTAAATGGATCGGGTCCCCGCTGCTAACGGCCTCTCTTTCCGGGTCGGGTTCACCGGCCACAGTGGCCACCTCACTGTTGAACCTCTGCCACCAGTCGACCGCCCCAACCGCCTCCACGATCTTCCCGACTTCATTCTCCCACCAGCA...

XM_057933879.1
TTTATTCTGACAAATCTGCCCCGGGGTTATTGTTGTGGGTTTTGCACTTCCTTGTGCGCCATTACTTGAATTCACCACTGCCAAAGTTGGAGCTCTGCTTAAATGGATCGGGTCCCCGCTGCTAACGGCCTCTCTTTCCGGGTCGGGTTCACCGGCCACAGTGGCCACCTCACTGTTGAACCTCTGCCACCAGTCGACCGCCCCAACCGCCTCCACGATCTTCCCGACTTCATTCTCCCACCAGCATTCCCTGAAGAAAC...

CDS

2 records

下载 CDS FASTA

LOC131006754
ATGGATCGGGTCCCCGCTGCTAACGGCCTCTCTTTCCGGGTCGGGTTCACCGGCCACAGTGGCCACCTCACTGTTGAACCTCTGCCACCAGTCGACCGCCCCAACCGCCTCCACGATCTTCCCGACTTCATTCTCCCACCAGCATTCCCTGAAGAAACGCCAGAGACGATAAAGGAATATGTGAAGGAGAAGTACCTATTACCGAGATTGGATGAAGATGTTTTTTCTCCGCAAAATGCTGGTAGACAATGGGAATTTGA...

Protein

2 records

下载 Protein FASTA

XP_057789861.1
MDRVPAANGLSFRVGFTGHSGHLTVEPLPPVDRPNRLHDLPDFILPPAFPEETPETIKEYVKEKYLLPRLDEDVFSPQNAGRQWEFDWFDRAEIQPEPSVRRSMIVPSWEIPFRRKKNESHLQRWEPQSVEVDISEMVTGSQDSGALPRIVGPAKDFVRGSINNRPFRPGGLDSTDSLGKIHPDGACNGEWARGLLHGESAQILPPGFKDGLDLGDLKAHPLRWEVYENVTVEKRTPDARLNELSVQFDDLFKKAWEDDV...

XP_057789862.1
MDRVPAANGLSFRVGFTGHSGHLTVEPLPPVDRPNRLHDLPDFILPPAFPEETPETIKEYVKEKYLLPRLDEDVFSPQNAGRQWEFDWFDRAEIQPEPSVRRSMIVPSWEIPFRRKKNESHLQRWEPQSVEVDISEMVTGSQDSGALPRIVGPAKDFVRGSINNRPFRPGGLDSTDSLGKIHPDGACNGEWARGLLHGESAQILPPGFKDGLDLGDLKAHPLRWEVYENVTVEKRTPDARLNELSVQFDDLFKKAWEDDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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