当前解析结果
SmilChr01G000768| 统一新 Gene ID | SmilChr01G000768 |
|---|---|
| 名称 | SmilChr01G000768 |
| 描述 | uncharacterized SmilChr01G000768 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16812885 - 16820170 / + |
| NCBI Gene ID | LOC130987987 |
|---|---|
| GeneID | 130987987 |
| locus_tag | - |
| NCBI Name | LOC130987987 |
| 原始查询 | SmilChr01G000768 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os05g0499500; species=rice; confidence=weak |
| 产物 | hit=Os05g0499500; species=rice; confidence=weak |
| Arabidopsis | AT1G05270 (AT1G05270)TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=44.8; qcov=0.294; evalue=4.59e-11; confidence=weak |
| Rice | Os05g0499500- identity=58; qcov=0.219; evalue=1.13e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987987 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057767729.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057767729.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057767729.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767729.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767729.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16812887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr1:16812897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:16812923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C36 |
Chr1:16812947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,C1 |
Chr1:16812950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B107,B15,B88,C13 |
Chr1:16812959 |
A |
AT |
1bp_insertion | frameshift_variant | 28 | A13,A15,A20,B10,B100,B111,B113,B119,B121,B139,B140,B17,B21,B38,B39,B65,B71,B91,C32,C38,C60,C62,C68,C7,C74,C80,C81,D6 |
Chr1:16812966 |
C |
T |
EMS_canonical_SNV | stop_gained | 33 | A10,A18,A21,B106,B118,B131,B133,B2,B20,B24,B25,B34,B35,B40,B71,B75,B91,B95,B97,C15,C25,C28,C48,C49,C51,C6,C64,C66,C72,C78,C8,D10,D3 |
Chr1:16812973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,C19,C53,C74 |
Chr1:16812984 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A11,A23,B122,B126,B130,B15,B20,B48,C14,C16,C33,C46,C50,C67,C74,C75,C79,D8 |
Chr1:16813007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C1 |
Chr1:16813012 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A2,B113,B115,B122,B124,B7,C54,C56 |
Chr1:16813032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B86,C1,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。