当前解析结果
SmilChr01G000773| 统一新 Gene ID | SmilChr01G000773 |
|---|---|
| 名称 | SmilChr01G000773 |
| 描述 | uncharacterized SmilChr01G000773 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16857237 - 16857923 / - |
| NCBI Gene ID | LOC131006777 |
|---|---|
| GeneID | 131006777 |
| locus_tag | - |
| NCBI Name | LOC131006777 |
| 原始查询 | SmilChr01G000773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | basic leucine-zipper 58 [Source:NCBI gene (formerly Entrezgene);Acc:837921]; symbol=bZIP58; hit=AT1G13600; species=arabidopsis; confidence=low |
| 产物 | basic leucine-zipper 58 [Source:NCBI gene (formerly Entrezgene);Acc:837921]; symbol=bZIP58; hit=AT1G13600; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G13600 (bZIP58)basic leucine-zipper 58 [Source:NCBI gene (formerly Entrezgene);Acc:837921] identity=53.2; qcov=0.403; evalue=3.09e-09; confidence=low |
| Rice | Os02g0132500 (OsbZIP14)- identity=55.8; qcov=0.279; evalue=1.17e-08; confidence=weak |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00170 (bZIP_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006777 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789894.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057789894.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057789894.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057789894.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057789894.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16857325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B127,B29,B54 |
Chr1:16857331 |
G |
A |
EMS_canonical_SNV | stop_gained | 48 | A1,A11,A18,A21,A22,A23,A25,A8,B1,B109,B111,B114,B117,B122,B131,B134,B26,B28,B33,B53,B67,B75,B76,B92,B94,B99,C10,C18,C27,C35,C39,C4,C43,C49,C55,C56,C59,C6,C63,C71,C75,C77,C79,C84,C87,D3,D6,D9 |
Chr1:16857333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,D10 |
Chr1:16857372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B48,B71,C53 |
Chr1:16857458 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | B123,B136,B34,B54,B64,B90,B92,B97,C20,C28,C7,C76 |
Chr1:16857469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:16857471 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C38 |
Chr1:16857471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:16857472 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C38 |
Chr1:16857472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:16857478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr1:16857503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789894.1PF00170
bZIP_1 83-114 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789894.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 83 | 114 | 8.5e-08 | 32.9 | bZIP transcription factor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。