Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000778`

染色体: Chr01 坐标: 16980751-16982877 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000778`
名称	SmilChr01G000778
描述	ras-related protein Rab11C
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	16980751 - 16982877 / `+`

ID 对照

NCBI Gene ID	`LOC131006783`
GeneID	`131006783`
locus_tag	`-`
NCBI Name	`LOC131006783`
原始查询	`SmilChr01G000778`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ras-related protein Rab11C
产物	ras-related protein Rab11C
Arabidopsis	`AT1G07410` (RABA2b) RAB GTPase homolog A2B [Source:NCBI gene (formerly Entrezgene);Acc:837253] identity=88.5; qcov=1; evalue=7.77e-142; confidence=high
Rice	`Os03g0823700` (OsRab11B2) - identity=86.6; qcov=1; evalue=6.07e-138; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:131006783

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057789903.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057789903.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057789903.1`
4	Vesicle	囊泡	1.00000	`XP_057789903.1`
5	Endosome	内体	1.00000	`XP_057789903.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:16981482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B35,B66,C78,C8
`Chr1:16982251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,B65
`Chr1:16982299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16982335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:16982371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16982381`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B82
`Chr1:16982381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:16982395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789903.1

217 aa

108

217

Arf

MMR_HSR1

Roc

Ras

PF00025 Arf 13-170 aa PF01926 MMR_HSR1 14-121 aa PF08477 Roc 14-128 aa PF00071 Ras 14-174 aa

XP_057789904.1

217 aa

108

217

Arf

MMR_HSR1

Roc

Ras

PF00025 Arf 13-170 aa PF01926 MMR_HSR1 14-121 aa PF08477 Roc 14-128 aa PF00071 Ras 14-174 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789903.1`	Pfam	`PF00025`	Arf	Domain	13	170	4e-14	53.2	ADP-ribosylation factor family
`XP_057789903.1`	Pfam	`PF01926`	MMR_HSR1	Family	14	121	2e-06	28.6	50S ribosome-binding GTPase
`XP_057789903.1`	Pfam	`PF08477`	Roc	Domain	14	128	9e-35	120.2	Ras of Complex, Roc, domain of DAPkinase
`XP_057789903.1`	Pfam	`PF00071`	Ras	Domain	14	174	5.5e-63	212.1	Ras family
`XP_057789904.1`	Pfam	`PF00025`	Arf	Domain	13	170	4e-14	53.2	ADP-ribosylation factor family
`XP_057789904.1`	Pfam	`PF01926`	MMR_HSR1	Family	14	121	2e-06	28.6	50S ribosome-binding GTPase
`XP_057789904.1`	Pfam	`PF08477`	Roc	Domain	14	128	9e-35	120.2	Ras of Complex, Roc, domain of DAPkinase
`XP_057789904.1`	Pfam	`PF00071`	Ras	Domain	14	174	5.5e-63	212.1	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933920.1
GTCACTAACAACATTCCAATAAATTCCACCCTGGCAGTGGCAAATCTCTCTCTCTTCCAACTCATTCCTATACACTATTTTTTGTCAACTCCCTCGACCAAGAATAACGCCCATTGATTGCCCCAATCAATCAATAGTATTTAATAATTAAATAGTGAGAATCTCCACATCATCATTCATCACCCTCAAATTGTTTTTTGTATCAGCATATAAAAATTTGCAAAGACAAATTTAATTTGGTAAACCTCATTCATATACAA...

XM_057933921.1
GCGGTAAGTCATCAAGAACCGATTTAATCTTCTCGATTCGTATACAATATTTTCTATTTATCCGATTTTATTCCCGTTTTAGATGATTTCTTGTGTGGGTTTTTGGGTAATCTTGGGATCGAAATGGCATGTGAGGGAGTAGACACAGAGAATAATCGAAGACAGAAATAACAGAGGCGAGTAAGAAGAGGTGATGGCGAGTAGAGTGGATCACGAGTACGATTACCTTTTCAAGATCGTGTTGATCGGCGACTCAGGAG...

CDS

2 records

下载 CDS FASTA

LOC131006783
ATGGCGAGTAGAGTGGATCACGAGTACGATTACCTTTTCAAGATCGTGTTGATCGGCGACTCAGGAGTGGGGAAATCCAACATTCTTTCCCGTTTCACCAGAAATGAGTTCTGTTTGGAGTCAAAATCGACCATCGGAGTTGAATTTGCCACCAGAACTCTTCAGATAGAAGGGAAGACGGTGAAGGCCCAGATATGGGACACTGCAGGACAGGAAAGGTATCGAGCGATTACAAGTGCTTACTACAGAGGAGCTGTTGG...

Protein

2 records

下载 Protein FASTA

XP_057789903.1
MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQIEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMTGNKSDLNHLRAVAEQDGQTLAEKEGLSFLETSALEAHNIEKAFQTILSEIYHIISKKALAAQEAAASTAVPGQGTTINVGDSSGNVKRGGCCST

XP_057789904.1
MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQIEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMTGNKSDLNHLRAVAEQDGQTLAEKEGLSFLETSALEAHNIEKAFQTILSEIYHIISKKALAAQEAAASTAVPGQGTTINVGDSSGNVKRGGCCST

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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