Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000782`

染色体: Chr01 坐标: 17030928-17036273 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000782`
名称	SmilChr01G000782
描述	serine/threonine-protein phosphatase PP1 isozyme 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17030928 - 17036273 / `+`

ID 对照

NCBI Gene ID	`LOC131006788`
GeneID	`131006788`
locus_tag	`-`
NCBI Name	`LOC131006788`
原始查询	`SmilChr01G000782`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase PP1 isozyme 2
产物	serine/threonine-protein phosphatase PP1 isozyme 2
Arabidopsis	`AT5G59160` (TOPP2) type one serine/threonine protein phosphatase 2 [Source:NCBI gene (formerly Entrezgene);Acc:836034] identity=86.4; qcov=0.997; evalue=0; confidence=high
Rice	`Os03g0268000` (OsPP1) - identity=88.6; qcov=0.968; evalue=0; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos); PF16891 (STPPase_N)
InterPro	-
eggNOG	-
NR	GeneID:131006788

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789905.1`
2	Cytoplasm	细胞质	1.00000	`XP_057789905.1`
3	Cytosol	细胞质基质	0.80000	`XP_057789905.1`
4	Nucleoplasm	核质	0.40000	`XP_057789905.1`
5	Midbody	Midbody	0.20000	`XP_057789905.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17031746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:17033872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B139
`Chr1:17034099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B110,B16,B88,C22
`Chr1:17034305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:17034400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789905.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

XP_057789907.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

XP_057789908.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

XP_057789909.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789905.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057789905.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	4.5e-50	171.5	Calcineurin-like phosphoesterase
`XP_057789907.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057789907.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	4.5e-50	171.5	Calcineurin-like phosphoesterase
`XP_057789908.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057789908.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	4.5e-50	171.5	Calcineurin-like phosphoesterase
`XP_057789909.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057789909.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	4.5e-50	171.5	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057933926.1
CCGGTTCATATTTCCAGTCGTGAAGAGAATTGGCGGAGTGAAGTAGCACTCTCTATTTTTAGCAACAATTTTGCTTCATCATGTGTAAGTATAATAAAGTTAAAGCCATTCAAAATAGAGAAGAGTTGAATATCCATTGTATTGTAACCCTAGATTTCGAATTCAACCAAACAACGCCTTCTCTCTCTCCCTCTGTGGCGCAGCAGCCCAGCACCAACACGACCCAATAAAGGAGAGGAGAAGAATAATACGAGTGAAGA...

XM_057933924.1
ATATTTCCAGTCGTGAAGAGAATTGGCGGAGTGAAGTAGCACTCTCTATTTTTAGCAACAATTTTGCTTCATCATGTGTAAGTATAATAAAGTTAAAGCCATTCAAAATAGAGAAGAGTTGAATATCCATTGTATTGTAACCCTAGATTTCGAATTCAACCAAACAACGCCTTCTCTCTCTCCCTCTGTGGCGCAGCAGCCCAGCACCAACACGACCCAATAAAGGAGAGGAGAAGAATAATACGAGTGAAGAAGAGGTG...

CDS

4 records

下载 CDS FASTA

LOC131006788
ATGGCCGGGAATGGGCAGGGGATAGAGCCTGCCGTGCTGGATGACATCATCAATCGCCTGTTGGAGTTCCGGAACGCGAGGACTGTGCGCCAGGTGCAGCTGTCCGAGAATGAGATCCGTGCTCTCTGCACTACGTCGCGCGAAATCTTCCTCTCGCAGCCCAATCTCCTCGAACTCGAAGCGCCTATCAAGATCTGCGGCGATATTCACGGACAATATGGAGATCTTTTGAGGCTTTTTGAATATGGGGGATTCCCTCC...

Protein

4 records

下载 Protein FASTA

XP_057789905.1
MAGNGQGIEPAVLDDIINRLLEFRNARTVRQVQLSENEIRALCTTSREIFLSQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLPRPTDIPDSGLLCDLLWSDPSREVKGWGMNDRGVSYTFGQDKVAEFLMQHDMDLVCRAHQVVEDGYE...

XP_057789907.1
MAGNGQGIEPAVLDDIINRLLEFRNARTVRQVQLSENEIRALCTTSREIFLSQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLPRPTDIPDSGLLCDLLWSDPSREVKGWGMNDRGVSYTFGQDKVAEFLMQHDMDLVCRAHQVVEDGYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器