当前解析结果
SmilChr01G000791| 统一新 Gene ID | SmilChr01G000791 |
|---|---|
| 名称 | SmilChr01G000791 |
| 描述 | uncharacterized SmilChr01G000791 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 17205651 - 17210637 / - |
| NCBI Gene ID | LOC131006795 |
|---|---|
| GeneID | 131006795 |
| locus_tag | - |
| NCBI Name | LOC131006795 |
| 原始查询 | SmilChr01G000791 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fringe-like protein (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:831121]; symbol=AT5G12460; hit=AT5G12460; species=arabidopsis; confidence=high |
| 产物 | fringe-like protein (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:831121]; symbol=AT5G12460; hit=AT5G12460; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G12460 (AT5G12460)fringe-like protein (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:831121] identity=46.9; qcov=0.885; evalue=3.78e-132; confidence=high |
| Rice | Os03g0269900- identity=42.5; qcov=0.94; evalue=4.63e-100; confidence=medium |
| GO | GO:0008375 (acetylglucosaminyltransferase activity) |
| KEGG | - |
| Pfam | PF02434 (Fringe); PF04646 (DUF604) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006795 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057789918.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057789918.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789918.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789918.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789918.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:17205854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr1:17206135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B139,C56,C60 |
Chr1:17206159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:17206160 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr1:17206160 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | D10 |
Chr1:17206224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:17209536 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | A18 |
Chr1:17209536 |
C |
CT |
1bp_insertion | CDS_variant | 1 | A18 |
Chr1:17209542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C32,C68,D10,D4 |
Chr1:17209662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B104,B34,B41 |
Chr1:17209677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B122,C50 |
Chr1:17209845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B122,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789918.1PF02434
Fringe 148-266 aa
PF04646
DUF604 200-446 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789918.1 |
Pfam | PF02434 |
Fringe | Domain | 148 | 266 | 2.5e-10 | 40.8 | Fringe-like |
XP_057789918.1 |
Pfam | PF04646 |
DUF604 | Family | 200 | 446 | 6.6e-94 | 314.8 | Protein of unknown function, DUF604 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。