Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000802`

染色体: Chr01 坐标: 17295571-17298604 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000802`
名称	SmilChr01G000802
描述	uncharacterized SmilChr01G000802
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17295571 - 17298604 / `-`

ID 对照

NCBI Gene ID	`LOC131006798`
GeneID	`131006798`
locus_tag	`-`
NCBI Name	`LOC131006798`
原始查询	`SmilChr01G000802`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828]; symbol=AT3G46750; hit=AT3G46750; species=arabidopsis; confidence=low
产物	low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828]; symbol=AT3G46750; hit=AT3G46750; species=arabidopsis; confidence=low
Arabidopsis	`AT3G46750` (AT3G46750) low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828] identity=30.9; qcov=0.435; evalue=1.32e-19; confidence=low
Rice	`Os10g0505900` - identity=36.4; qcov=0.183; evalue=2.61e-07; confidence=weak
GO	GO:0009737 (response to abscisic acid)
KEGG	-
Pfam	PF23399 (LTI65_PGEED)
InterPro	-
eggNOG	-
NR	GeneID:131006798

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057789920.1`
2	Cytosol	细胞质基质	0.60000	`XP_057789923.1`
3	Cell membrane	细胞膜	0.40000	`XP_057789921.1`
4	Nucleus	细胞核	0.00000	`XP_057789920.1`
5	Chromosome	染色体	0.00000	`XP_057789920.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17296329`	`G`	`GA`	1bp_insertion	frameshift_variant	99	A1,A10,A13,A2,A20,A23,A25,A3,A8,B10,B101,B105,B106,B108,B11,B112,B113,B115,B117,B12,B121,B123,B126,B127,B128,B129,B13,B131,B133,B136,B137,B138,B140,B17,B2,B21,B25,B26,B3,B30,B31,B32,B35,B41,B42,B46,B49,B52,B54,B62,B64,B66,B72,B80,B81,B85,B86,B87,B89,B9,B90,B92,B93,B95,B99,C1,C10,C12,C15,C17,C20,C21,C23,C24,C27,C29,C30,C31,C33,C35,C38,C41,C43,C44,C46,C52,C53,C59,C61,C63,C64,C65,C66,C67,C73,C8,C81,C87,D1
`Chr1:17296439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B29
`Chr1:17297857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:17297898`	`CCA`	`C`	2bp_deletion	frameshift_variant	1	B9
`Chr1:17297898`	`CCA`	`C`	2bp_deletion	CDS_variant	1	B9
`Chr1:17297899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B24,C20,C27
`Chr1:17298005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789920.1

667 aa

334

667

LTI65_PGEED

PF23399 LTI65_PGEED 441-471 aa

XP_057789921.1

637 aa

318

637

LTI65_PGEED

PF23399 LTI65_PGEED 411-441 aa

XP_057789922.1

632 aa

316

632

LTI65_PGEED

PF23399 LTI65_PGEED 441-471 aa

XP_057789923.1

602 aa

301

602

LTI65_PGEED

PF23399 LTI65_PGEED 411-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789920.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	441	471	4.3e-17	62.3	LTI65/LTI78 PGEED repeat
`XP_057789921.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	411	441	3.9e-17	62.4	LTI65/LTI78 PGEED repeat
`XP_057789922.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	441	471	3.8e-17	62.5	LTI65/LTI78 PGEED repeat
`XP_057789923.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	411	441	3.4e-17	62.6	LTI65/LTI78 PGEED repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057933940.1
AATAGTTATAAAAAAAGTAATGAAGCAGGAGAGTCATTGTAGAGTAGGACCAAGTCAAGTTACTAAATAAAGTACTCCACAATTGTATGGAGTCACATATTTGGAAAGCCAAAGGCAGAATATAGTTTTAGATTGTAGTCCATTGGAGAAGCCGAGAAACATGGCTTAAAAAAAGGTGGCTGCGCGCGCTCTTATATATTCCTCGTTGCTTTGCATTCGCGAAATCAACACATGAAAAACACAAGAATGGCTCAACTTGA...

XM_057933939.1
TGGAGAAGCCGAGAAACATGGCTTAAAAAAAGGTGGCTGCGCGCGCTCTTATATATTCCTCGTTGCTTTGCATTCGCGAAATCAACACATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAGAAATTATCAGAAAGCAGCCCTAAATCGCCTAAATCTCAAACGTCACCCACTTTCGACCAGCTCCTAAGAGGTAGTATTTTATTTTCATTTTCAATTTTATATTCCTCTTGCCTTTATTTATTTAGAATCTTGA...

CDS

4 records

下载 CDS FASTA

LOC131006798
ATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAGAAATTATCAGAAAGCAGCCCTAAATCGCCTAAATCTCAAACGTCACCCACTTTCGACCAGCTCCTAAGAGTTGAAGAGGCATACTGGTCATCAAATGTGTCGCCCGGCGGTAGAGCATGCCATGATCATGAAGTGTGCCCCAGCCATTGCACTTCCGGCGACAACAAGAAGTCGGTTCTCTCTAAGGTCAAGGACACGGCCAAGAAGCTGAGGCACAGTAT...

LOC131006798
ATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAGAAATTATCAGAAAGCAGCCCTAAATCGCCTAAATCTCAAACGTCACCCACTTTCGACCAGCTCCTAAGAGGTAGTATTTTATTTTCATTTTCAATTTTATATTCCTCTTGCCTTTATTTATTTAGAATCTTGAAACGAAATAATAATGTAATTAATATAGTTGAAGAGGCATACTGGTCATCAAATGTGTCGCCCGGCGGTAGAGCATGCCATGATCATGA...

Protein

4 records

下载 Protein FASTA

XP_057789920.1
MKNTRMAQLERRKKLSESSPKSPKSQTSPTFDQLLRGSILFSFSILYSSCLYLFRILKRNNNVINIVEEAYWSSNVSPGGRACHDHEVCPSHCTSGDNKKSVLSKVKDTAKKLRHSISGRRKNGIEFHDHDHDHNYHHSHVHNYQHSHDHNRGLSHGHGHSHSHDHITPSWGATVEDDYDHEQDYDPEYLGAPMYESEAAPDCLKETARQHPRAEPVVSASHRAPNMNYEAALQRNDKPVTPNTGVITNATHAVAEKLAP...

XP_057789921.1
MKNTRMAQLERRKKLSESSPKSPKSQTSPTFDQLLRVEEAYWSSNVSPGGRACHDHEVCPSHCTSGDNKKSVLSKVKDTAKKLRHSISGRRKNGIEFHDHDHDHNYHHSHVHNYQHSHDHNRGLSHGHGHSHSHDHITPSWGATVEDDYDHEQDYDPEYLGAPMYESEAAPDCLKETARQHPRAEPVVSASHRAPNMNYEAALQRNDKPVTPNTGVITNATHAVAEKLAPACAAVSDAAHNTTQTIANKLAPACATVSDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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