Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000832`

染色体: Chr01 坐标: 17917246-17935036 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000832`
名称	SmilChr01G000832
描述	protein CHROMATIN REMODELING 5
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17917246 - 17935036 / `-`

ID 对照

NCBI Gene ID	`LOC131006823`
GeneID	`131006823`
locus_tag	`-`
NCBI Name	`LOC131006823`
原始查询	`SmilChr01G000832`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHROMATIN REMODELING 5
产物	protein CHROMATIN REMODELING 5
Arabidopsis	`AT2G13370` (CHR5) chromatin remodeling 5 [Source:NCBI gene (formerly Entrezgene);Acc:815823] identity=64.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os07g0660200` (CHR705) - identity=64.6; qcov=0.364; evalue=0; confidence=low
GO	GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016887 (ATP hydrolysis activity); GO:0034728 (nucleosome organization); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00270 (DEAD); PF00271 (Helicase_C); PF00385 (Chromo); PF04851 (ResIII); PF11496 (HDA2-3); PF13907 (CHD1-like_C); PF23588 (HTH_CHD1_Hrp3)
InterPro	-
eggNOG	-
NR	GeneID:131006823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789963.1`
2	Chromosome	染色体	0.40000	`XP_057789963.1`
3	Centromere	着丝粒	0.00000	`XP_057789963.1`
4	Chromatin	染色质	0.00000	`XP_057789963.1`
5	Telomere	端粒	0.00000	`XP_057789963.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17917727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B56,B96,C55
`Chr1:17918430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C5
`Chr1:17918614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B24,B68,C85
`Chr1:17919955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:17921837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:17921876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr1:17921898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:17922714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:17923518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B24,B68,C85
`Chr1:17923573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:17924390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr1:17924421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789963.1

1707 aa

854

1707

Chromo

ResIII

SNF2-rel_dom

DEAD

HDA2-3

Helicase_C

HTH_CHD1_Hrp3

CHD1-like_C

PF00385 Chromo 514-568 aa PF04851 ResIII 604-771 aa PF00176 SNF2-rel_dom 608-892 aa PF00270 DEAD 619-777 aa PF11496 HDA2-3 843-1066 aa PF00271 Helicase_C 922-1035 aa PF23588 HTH_CHD1_Hrp3 1347-1429 aa PF13907 CHD1-like_C 1511-1603 aa

XP_057789964.1

1706 aa

853

1706

Chromo

ResIII

SNF2-rel_dom

DEAD

HDA2-3

Helicase_C

HTH_CHD1_Hrp3

CHD1-like_C

PF00385 Chromo 513-567 aa PF04851 ResIII 603-770 aa PF00176 SNF2-rel_dom 607-891 aa PF00270 DEAD 618-776 aa PF11496 HDA2-3 842-1065 aa PF00271 Helicase_C 921-1034 aa PF23588 HTH_CHD1_Hrp3 1346-1428 aa PF13907 CHD1-like_C 1510-1602 aa

XP_057789965.1

1706 aa

853

1706

Chromo

ResIII

SNF2-rel_dom

DEAD

HDA2-3

Helicase_C

HTH_CHD1_Hrp3

CHD1-like_C

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789963.1`	Pfam	`PF00385`	Chromo	Domain	514	568	8.4e-17	61.6	Chromo (CHRromatin Organisation MOdifier) domain
`XP_057789963.1`	Pfam	`PF04851`	ResIII	Family	604	771	8.7e-13	49.2	Type III restriction enzyme, res subunit
`XP_057789963.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	608	892	1.8e-87	293.8	SNF2-related domain
`XP_057789963.1`	Pfam	`PF00270`	DEAD	Domain	619	777	1.5e-07	32.0	DEAD/DEAH box helicase
`XP_057789963.1`	Pfam	`PF11496`	HDA2-3	Domain	843	1066	9.1e-14	52.0	Class II histone deacetylase complex subunits 2 and 3
`XP_057789963.1`	Pfam	`PF00271`	Helicase_C	Domain	922	1035	9.8e-28	97.3	Helicase conserved C-terminal domain
`XP_057789963.1`	Pfam	`PF23588`	HTH_CHD1_Hrp3	Domain	1347	1429	6.1e-23	81.4	ATP-dependent helicase CHD1-2/hrp3 HTH domain
`XP_057789963.1`	Pfam	`PF13907`	CHD1-like_C	Domain	1511	1603	1.2e-16	61.6	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
`XP_057789964.1`	Pfam	`PF00385`	Chromo	Domain	513	567	8.4e-17	61.6	Chromo (CHRromatin Organisation MOdifier) domain
`XP_057789964.1`	Pfam	`PF04851`	ResIII	Family	603	770	8.8e-13	49.2	Type III restriction enzyme, res subunit
`XP_057789964.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	607	891	1.8e-87	293.8	SNF2-related domain
`XP_057789964.1`	Pfam	`PF00270`	DEAD	Domain	618	776	1.5e-07	32.0	DEAD/DEAH box helicase
`XP_057789964.1`	Pfam	`PF11496`	HDA2-3	Domain	842	1065	9.1e-14	52.0	Class II histone deacetylase complex subunits 2 and 3
`XP_057789964.1`	Pfam	`PF00271`	Helicase_C	Domain	921	1034	9.8e-28	97.3	Helicase conserved C-terminal domain
`XP_057789964.1`	Pfam	`PF23588`	HTH_CHD1_Hrp3	Domain	1346	1428	6.1e-23	81.4	ATP-dependent helicase CHD1-2/hrp3 HTH domain
`XP_057789964.1`	Pfam	`PF13907`	CHD1-like_C	Domain	1510	1602	1.2e-16	61.6	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
`XP_057789965.1`	Pfam	`PF00385`	Chromo	Domain	513	567	8.3e-17	61.6	Chromo (CHRromatin Organisation MOdifier) domain
`XP_057789965.1`	Pfam	`PF04851`	ResIII	Family	603	770	8.7e-13	49.2	Type III restriction enzyme, res subunit
`XP_057789965.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	607	891	1.8e-87	293.8	SNF2-related domain
`XP_057789965.1`	Pfam	`PF00270`	DEAD	Domain	618	776	1.5e-07	32.0	DEAD/DEAH box helicase
`XP_057789965.1`	Pfam	`PF11496`	HDA2-3	Domain	842	1065	9e-14	52.0	Class II histone deacetylase complex subunits 2 and 3
`XP_057789965.1`	Pfam	`PF00271`	Helicase_C	Domain	921	1034	9.8e-28	97.3	Helicase conserved C-terminal domain
`XP_057789965.1`	Pfam	`PF23588`	HTH_CHD1_Hrp3	Domain	1346	1428	6.1e-23	81.4	ATP-dependent helicase CHD1-2/hrp3 HTH domain
`XP_057789965.1`	Pfam	`PF13907`	CHD1-like_C	Domain	1510	1602	1.2e-16	61.6	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933982.1
CGTCTAAGGAAAAAATAACCTCTCACAAATCCAAATTTTCTCCCTGATTCTCTCTCTACATAAAACTCCCAAATACACATATACGCGCACCCCTCTCTCTATTTTTTTTTTCTTTTCATTCTTCTTTCCTCTTCTGTGCATCATCGGACAATAACACTGGTAGATAAATCCAATCGAGGTTTCCGATTCGTGGATTTTGCTCTCCCTCAAACCCGCTTCACCCTGCGCGATAGTAAATTAGCGGTTTTTCAACACGACCC...

XM_057933981.1
CGTCTAAGGAAAAAATAACCTCTCACAAATCCAAATTTTCTCCCTGATTCTCTCTCTACATAAAACTCCCAAATACACATATACGCGCACCCCTCTCTCTATTTTTTTTTTCTTTTCATTCTTCTTTCCTCTTCTGTGCATCATCGGACAATAACACTGGTAGATAAATCCAATCGAGGTTTCCGATTCGTGGATTTTGCTCTCCCTCAAACCCGCTTCACCCTGCGCGATAGTAAATTAGCGGTTTTTCAACACGACCC...

CDS

3 records

下载 CDS FASTA

LOC131006823
ATGGCGTTTTCCAGAAATTCCTCAGATGAAGCAGTGGAACAGATTGCATTGAATGAGAGAAGTCATTTGCATCAGCTGGCCATTGATAGCAGTAGGCTTAAGGAGAATGCTATGATCAATAATGAAGAAATGACAGATCTTACACCAGATAACAATGCGGGTGAAGATAGTAGAAGTAATCTCAGGATAGGACATGACCAGCCTCCTGTTAGGGGAACGACTATGGGGGGGAAGTGGGGTTCAACTTTTTGGAAGGACTA...

Protein

3 records

下载 Protein FASTA

XP_057789963.1
MAFSRNSSDEAVEQIALNERSHLHQLAIDSSRLKENAMINNEEMTDLTPDNNAGEDSRSNLRIGHDQPPVRGTTMGGKWGSTFWKDYPPARTSHGPLESGEESKSGSEYKGSEVEEESDGVEDRMESEYDDITHKDLTGKGHQTVPADEMLSDEYYEQDGDEPPNESVNHYRAMNHSHGYSSKPPSRPAPSNISRKLKGSKANKYSDEDADYEDDDDDEDEDDPDDADFNPDYGARSRERRIKDKDDGWDAEESDEEDNV...

XP_057789964.1
MAFSRNSSDEAVEQIALNERSHLHQLAIDSSRLKENAMINNEEMTDLTPDNNAGEDSRSNLRIGHDQPPVRGTTMGGKWGSTFWKDYPPARTSHGPLESGEESKSGSEYKGSEVEEESDGVEDRMESEYDDITHKDLTGKGHQTVPADEMLSDEYYEQDGDEPPNESVNHYRAMNHSHGYSSKPPSRPAPSNISRKLKGSKANKYSDEDADYEDDDDDEDEDDPDDADFNPDYGARSRERRIKDKDDGWDAEESDEEDNV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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