当前解析结果
SmilChr01G000843| 统一新 Gene ID | SmilChr01G000843 |
|---|---|
| 名称 | SmilChr01G000843 |
| 描述 | uncharacterized SmilChr01G000843 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 18274435 - 18279623 / + |
| NCBI Gene ID | LOC130991453 |
|---|---|
| GeneID | 130991453 |
| locus_tag | - |
| NCBI Name | LOC130991453 |
| 原始查询 | SmilChr01G000843 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=45.6; qcov=0.849; evalue=8.35e-125; confidence=high |
| Rice | Os01g0872900- identity=54.6; qcov=0.195; evalue=9.39e-30; confidence=weak |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF04827 (Plant_tran); PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991453 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771715.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057771715.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057771715.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057771715.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057771715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:18274437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B75,D2 |
Chr1:18274444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C51 |
Chr1:18274447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B75,C87,D2 |
Chr1:18274470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C16 |
Chr1:18274484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr1:18274501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,C16,C7 |
Chr1:18274510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C80,D8 |
Chr1:18274511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C29 |
Chr1:18274512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,B89 |
Chr1:18274517 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B107,B14 |
Chr1:18274517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B14 |
Chr1:18274518 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B117,B23,C27,C35,C56,C80,D10,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771715.1PF04827
Plant_tran 4-102 aa
PF05699
Dimer_Tnp_hAT 409-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771715.1 |
Pfam | PF04827 |
Plant_tran | Family | 4 | 102 | 2.4e-39 | 135.8 | Plant transposon protein |
XP_057771715.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 409 | 475 | 8.7e-10 | 39.0 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。