当前解析结果
SmilChr01G000878| 统一新 Gene ID | SmilChr01G000878 |
|---|---|
| 名称 | SmilChr01G000878 |
| 描述 | two-component response regulator ARR14-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 18659187 - 18660847 / - |
| NCBI Gene ID | LOC131006859 |
|---|---|
| GeneID | 131006859 |
| locus_tag | - |
| NCBI Name | LOC131006859 |
| 原始查询 | SmilChr01G000878 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | two-component response regulator ARR14-like |
| 产物 | two-component response regulator ARR14-like |
| Arabidopsis | AT3G16857 (RR1)response regulator 1 [Source:NCBI gene (formerly Entrezgene);Acc:820940] identity=60.4; qcov=0.265; evalue=1.72e-13; confidence=weak |
| Rice | Os10g0463400 (EF1)- identity=58; qcov=0.276; evalue=3.62e-12; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006859 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789994.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057789994.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057789994.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057789994.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057789994.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:18659480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:18659693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:18659734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C62 |
Chr1:18659779 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:18659798 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | A1,B3,B86 |
Chr1:18659798 |
A |
AG |
1bp_insertion | CDS_variant | 3 | A1,B3,B86 |
Chr1:18659881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B3,B86,C5,D11 |
Chr1:18659918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C82 |
Chr1:18659941 |
TGC |
T |
2bp_deletion | frameshift_variant | 4 | B24,B68,B82,C85 |
Chr1:18659941 |
TGC |
T |
2bp_deletion | CDS_variant | 4 | B24,B68,B82,C85 |
Chr1:18659976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,B71 |
Chr1:18659992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B3,B86,C5,C55 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。