Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000881`

染色体: Chr01 坐标: 18743230-18746388 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000881`
名称	SmilChr01G000881
描述	U-box domain-containing protein 44-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	18743230 - 18746388 / `-`

ID 对照

NCBI Gene ID	`LOC131006862`
GeneID	`131006862`
locus_tag	`-`
NCBI Name	`LOC131006862`
原始查询	`SmilChr01G000881`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 44-like
产物	U-box domain-containing protein 44-like
Arabidopsis	`AT1G76390` (PUB43) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843971] identity=25.3; qcov=0.849; evalue=2.47e-35; confidence=low
Rice	`Os01g0948500` - identity=54.9; qcov=0.738; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131006862

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789996.1`
2	Cell membrane	细胞膜	0.40000	`XP_057789997.1`
3	Cytoplasm	细胞质	0.20000	`XP_057789997.1`
4	Chromosome	染色体	0.00000	`XP_057789996.1`
5	Centromere	着丝粒	0.00000	`XP_057789996.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:18743352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr1:18743558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:18743669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr1:18743728`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B15
`Chr1:18743728`	`TC`	`T`	1bp_deletion	CDS_variant	1	B15
`Chr1:18743791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C80
`Chr1:18743936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C19,C47,C82
`Chr1:18743938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr1:18743945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B29,B76,B91
`Chr1:18744139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B2,B90,B92
`Chr1:18744323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,C15,D5
`Chr1:18744350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B103

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934014.1
ATTAGTATAATATTTCCCTCTTTCACATACAACAAGTAATCACTTTCACTCTTCAACAATAAATTTCAACTGAATATGACATCAAAGATGCCATCACCGCAACCTTCCAATTCCCCTTTCTGTGTGTGTGTTTGTGTGTGTGGATATTACAAAGGAAAGAAGAAGAAGAAGACAAAAGACTTGAGTCGAAACCAAGTCCAAGTCTCTCTCATCACTCCTTTGACCTCCTAAAAATCTCCTCAAATTGAATTAGCAATCTC...

XM_057934013.1
ATTAGTATAATATTTCCCTCTTTCACATACAACAAGTAATCACTTTCACTCTTCAACAATAAATTTCAACTGAATATGACATCAAAGATGCCATCACCGCAACCTTCCAATTCCCCTTTCTGTGTGTGTGTTTGTGTGTGTGGATATTACAAAGGAAAGAAGAAGAAGAAGACAAAAGACTTGAGTCGAAACCAAGTCCAAGTCTCTCTCATCACTCCTTTGACCTCCTAAAAATCTCCTCAAATTGAATTAGCAATCTC...

CDS

2 records

下载 CDS FASTA

LOC131006862
ATGGAGGAATTCGACTCGCGATCATCATCCTCATCAATGAAAACAGAGGCAGTTGCAGAGCTCTCAATCTTGATCGAAAGGATCAATCCGATCCTGAGCGAGATAAGAAGCGGCAGCATGGAGCCGGCGTTGGAGAAGGCGATCGCGTCGTTGGAGAGCGACTACGAGCGGGCGAGGGCGGCCGTGGCGTCGCCGCCCAAGCACATCGAGTGCCTGGTGCAGAACCTCGGGAGGTCGCTGGGGCTCACTCTCTTCGCCAG...

Protein

2 records

下载 Protein FASTA

XP_057789996.1
MEEFDSRSSSSSMKTEAVAELSILIERINPILSEIRSGSMEPALEKAIASLESDYERARAAVASPPKHIECLVQNLGRSLGLTLFASRDSPLSNKEKIEALCKEIMNVRFDSSSWAEETETEIEAEEIVEEIAEEETRVLSVDEAILEIKYGGEEEFKNALLVLDEFVRDGMIRSEVINDQELPRILCSRFRSCKGNHRFIVIRIITYLAQHNAHHKEKMKDLEFLSALVKSLARDAEEQKAAVGLLLSLSDDAGVRRRI...

XP_057789997.1
MEEFDSRSSSSSMKTEAVAELSILIERINPILSEIRSGSMEPALEKAIASLESDYERARAAVASPPKHIECLVQNLGRSLGLTLFASRDSPLSNKEKIEALCKEIMNVRFDSSSWAEETETEIEAEEIVEEIAEEETRVLSVDEAILEIKYGGEEEFKNALLVLDEFVRDGMIRSEVINDQELPRILCSRFRSCKGNHRFIVIRIITYLAQHNAHHKEKMKDLEFLSALVKSLARDAEEQKAAVGLLLSLSDDAGVRRRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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