Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000885`

染色体: Chr01 坐标: 18882476-18894650 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000885`
名称	SmilChr01G000885
描述	uncharacterized SmilChr01G000885
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	18882476 - 18894650 / `-`

ID 对照

NCBI Gene ID	`LOC131006864`
GeneID	`131006864`
locus_tag	`-`
NCBI Name	`LOC131006864`
原始查询	`SmilChr01G000885`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818459]; symbol=EMB2765; hit=AT2G38770; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818459]; symbol=EMB2765; hit=AT2G38770; species=arabidopsis; confidence=high
Arabidopsis	`AT2G38770` (EMB2765) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818459] identity=76.1; qcov=0.988; evalue=0; confidence=high
Rice	`Os03g0387000` - identity=76.6; qcov=0.341; evalue=0; confidence=low
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003729 (mRNA binding); GO:0004386 (helicase activity); GO:0071013 (catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF13086 (AAA_11); PF13087 (AAA_12); PF13245 (AAA_19); PF16399 (Aquarius_N_1st); PF21143 (Aquarius_N_2nd); PF21144 (Aquarius_N_3rd)
InterPro	-
eggNOG	-
NR	GeneID:131006864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789998.1`
2	Cytoplasm	细胞质	1.00000	`XP_057789998.1`
3	Chromosome	染色体	0.00000	`XP_057789998.1`
4	Centromere	着丝粒	0.00000	`XP_057789998.1`
5	Chromatin	染色质	0.00000	`XP_057789998.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:18882978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:18883058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,C80
`Chr1:18884914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:18884986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C25,D1
`Chr1:18885244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B15,C25,C38,D1,D10
`Chr1:18885277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr1:18885435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:18885509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B3,B86,C5
`Chr1:18885861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:18885868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B33,C45,C61
`Chr1:18885886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C29
`Chr1:18885889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789998.1

1532 aa

766

1532

Aquarius_N_1st

Aquarius_N_2nd

Aquarius_N_3rd

AAA_19

AAA_11

AAA_12

PF16399 Aquarius_N_1st 56-465 aa PF21143 Aquarius_N_2nd 547-716 aa PF21144 Aquarius_N_3rd 766-865 aa PF13245 AAA_19 880-1171 aa PF13086 AAA_11 886-1174 aa PF13087 AAA_12 1183-1375 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789998.1`	Pfam	`PF16399`	Aquarius_N_1st	Repeat	56	465	3.8e-135	451.6	Intron-binding protein aquarius N-terminal
`XP_057789998.1`	Pfam	`PF21143`	Aquarius_N_2nd	Domain	547	716	1.3e-56	191.6	Intron-binding protein aquarius, beta-barrel
`XP_057789998.1`	Pfam	`PF21144`	Aquarius_N_3rd	Domain	766	865	7.3e-19	69.0	Intron-binding protein aquarius insert domain
`XP_057789998.1`	Pfam	`PF13245`	AAA_19	Domain	880	1171	2.2e-07	31.8	AAA domain
`XP_057789998.1`	Pfam	`PF13086`	AAA_11	Domain	886	1174	7e-28	98.8	AAA domain
`XP_057789998.1`	Pfam	`PF13087`	AAA_12	Domain	1183	1375	1.9e-24	87.0	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934015.1
AATAATTTAAATTAGAATGTAAAGTGATTTTCATCCAATTTGGAAGAGTTATGAGTAGAGTGTAACATGTACTCAATTTGCAAATGATGCGCGCGCTCGAAAAATGAATGACGGGGATGTCTGATAACGTATTTTAGTTCTCTTTCCCGTTCTGTTTGGTGGAGGTTTCTGAAAACCCATTCACTCGTAAAACCCTAATTCGATTTCCCACTCCCCCTCTCACTTTATTCAATCCAATGACGAAAGTATACGGCGTCGGA...

CDS

1 records

下载 CDS FASTA

LOC131006864
ATGACGAAAGTATACGGCGTCGGACTCTACGATTTCCGGCGACACCGGGTGGCTGAGTACCCGGTTGCCGGGGAGGCGCCCCCTGTGCCTGAAAAGCCGGCTGAGTCCAGGCCACTATTCAACGCGCCCAGCTCTATTACCCTAAGCGAGATTCAGAGAGACCGTCTCACGAGAATTGCAGCCGAAAATTGGATGAAAACCGCTGATTCTGGCCCAACGAAGCCCTTCAGCCCGGACCTTGTTGAAGAAATTTACTCCAC...

Protein

1 records

下载 Protein FASTA

XP_057789998.1
MTKVYGVGLYDFRRHRVAEYPVAGEAPPVPEKPAESRPLFNAPSSITLSEIQRDRLTRIAAENWMKTADSGPTKPFSPDLVEEIYSTELTVKGGRKPVPLQRVMILEVSQYLENYLLPNFNPETASFEHVMSMILMVNEKFRENVAAWICFYERKDMFKSFLERVLRLKEGRSLTISEKTNYLLFMINAFQSLEDEVVSERIMRLASLECWHSLSYGRFQMELCLNENLIKKWRRIAKRAMDATKQGGTFDPTTMLEANF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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