Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000927

染色体: Chr01 坐标: 19658453-19659933 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000927
名称SmilChr01G000927
描述basic leucine zipper 23-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向19658453 - 19659933 / -

ID 对照

NCBI Gene IDLOC131006899
GeneID131006899
locus_tag-
NCBI NameLOC131006899
原始查询SmilChr01G000927

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述basic leucine zipper 23-like
产物basic leucine zipper 23-like
ArabidopsisAT2G16770 (bZIP23)
Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816178]
identity=55; qcov=0.873; evalue=5.81e-49; confidence=medium
RiceOs06g0716800 (OsbZIP53)
-
identity=47.6; qcov=0.96; evalue=3.23e-43; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006351 (DNA-templated transcription); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG-
PfamPF07716 (bZIP_2)
InterPro-
eggNOG-
NRGeneID:131006899

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057790030.1
2 Chromosome 染色体 0.00000 XP_057790030.1
3 Centromere 着丝粒 0.00000 XP_057790030.1
4 Chromatin 染色质 0.00000 XP_057790030.1
5 Telomere 端粒 0.00000 XP_057790030.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:19658873 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790030.1
173 aa
N
1
86
173
bZIP_2
C
PF07716 bZIP_2 76-123 aa
XP_057790031.1
173 aa
N
1
86
173
bZIP_2
C
PF07716 bZIP_2 76-123 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790030.1 Pfam PF07716 bZIP_2 Coiled-coil 76 123 8.2e-09 36.1 Basic region leucine zipper
XP_057790031.1 Pfam PF07716 bZIP_2 Coiled-coil 76 123 8.2e-09 36.1 Basic region leucine zipper

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057934047.1
TAGCACAGAACGAAATAGAATCTCACAAAGAGCGAGCGCTACACGTATCAATATGTCATCGCGAATAATAAGTCTAGCTGCTGCTTTCACACTCAAAATTAAGTGTGGACTTTCACATTTTGTGTGTAAAAAAAAAGATAAAACATTTTTGAAAACTGAAACAAAAAACCATGAAAAAGGGCTTTCTTGAATGAATCATGCTTCCTCAAATCAAATAAATCTACAGCGATGTAAGTCTTGATTTTAGCTTTTCAGGTTTG...
XM_057934048.1
GAAATAGAATCTCACAAAGAGCGAGCGCTACACGTATCAATATGTCATCGCGAATAATAAGTCTAGCTGCTGCTTTCACACTCAAAATTAAGTGTGGACTTTCACATTTTGTGTGTAAAAAAAAAGATAAAACATTTTTGAAAACTGAAACAAAAAACCATGAAAAAGGGCTTTCTTGAATGAATCATGCTTCCTCAAATCAAATAAATCTACAGCGATGTAAGTCTTGATTTTAGCTTTTCAGGTAAGACACACAAACT...

CDS

2 records

下载 CDS FASTA
LOC131006899
ATGGATGATGATGGGGAGATTGAGGTTACAATACGCCCAAATTCGGATTGTTCAAGTAATTTGCAAGCATCGGTCTCATCGGATTCGTTTCTTGATGATTTGTTGAGGAATTCAGAAAGCTGCAGCCACACTCACACTTGCAACCCGCCCGGCCGGGATGCTGCACACACTCACACATGTTACCACGCACACACTCGTGTGATTCCACCCGAAGATGTTGCAAACGAGAAATCTAGGCCGAGGAGGGCTTCGGGGAACCG...
LOC131006899
ATGGATGATGATGGGGAGATTGAGGTTACAATACGCCCAAATTCGGATTGTTCAAGTAATTTGCAAGCATCGGTCTCATCGGATTCGTTTCTTGATGATTTGTTGAGGAATTCAGAAAGCTGCAGCCACACTCACACTTGCAACCCGCCCGGCCGGGATGCTGCACACACTCACACATGTTACCACGCACACACTCGTGTGATTCCACCCGAAGATGTTGCAAACGAGAAATCTAGGCCGAGGAGGGCTTCGGGGAACCG...

Protein

2 records

下载 Protein FASTA
XP_057790030.1
MDDDGEIEVTIRPNSDCSSNLQASVSSDSFLDDLLRNSESCSHTHTCNPPGRDAAHTHTCYHAHTRVIPPEDVANEKSRPRRASGNREAVRKYREKKKAEAAHLEEEAKRLRLMNQVLMGKLQRQPFLEAEILRLRSLLLGIRGRIDDELPSQAGGDLGCSLIYPEKLCMVRE
XP_057790031.1
MDDDGEIEVTIRPNSDCSSNLQASVSSDSFLDDLLRNSESCSHTHTCNPPGRDAAHTHTCYHAHTRVIPPEDVANEKSRPRRASGNREAVRKYREKKKAEAAHLEEEAKRLRLMNQVLMGKLQRQPFLEAEILRLRSLLLGIRGRIDDELPSQAGGDLGCSLIYPEKLCMVRE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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