Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000939`

染色体: Chr01 坐标: 19891836-19895713 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000939`
名称	SmilChr01G000939
描述	uncharacterized SmilChr01G000939
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	19891836 - 19895713 / `+`

ID 对照

NCBI Gene ID	`LOC131006908`
GeneID	`131006908`
locus_tag	`-`
NCBI Name	`LOC131006908`
原始查询	`SmilChr01G000939`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825262]; symbol=AT3G60910; hit=AT3G60910; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825262]; symbol=AT3G60910; hit=AT3G60910; species=arabidopsis; confidence=high
Arabidopsis	`AT3G60910` (AT3G60910) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825262] identity=72.2; qcov=0.94; evalue=7.17e-131; confidence=high
Rice	`Os08g0517600` (P0700D12.112-1) - identity=47.3; qcov=0.881; evalue=1.31e-67; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131006908

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790033.1`
2	Cytoplasm	细胞质	1.00000	`XP_057790033.1`
3	Nucleoplasm	核质	0.80000	`XP_057790034.1`
4	Cytosol	细胞质基质	0.60000	`XP_057790033.1`
5	Chromosome	染色体	0.00000	`XP_057790033.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:19892172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:19892195`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B135
`Chr1:19892195`	`TC`	`T`	1bp_deletion	CDS_variant	1	B135
`Chr1:19892201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:19892981`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C38
`Chr1:19892981`	`GA`	`G`	1bp_deletion	CDS_variant	1	C38
`Chr1:19893774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr1:19895114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:19895117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,C1,C44,C57,C70
`Chr1:19895237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:19895251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,B75,D11
`Chr1:19895285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B21,B44,B71,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790033.1

253 aa

126

253

Methyltransf_31

Methyltransf_25

Methyltransf_11

PF13847 Methyltransf_31 50-163 aa PF13649 Methyltransf_25 55-155 aa PF08241 Methyltransf_11 56-158 aa

XP_057790034.1

252 aa

126

252

Methyltransf_31

Methyltransf_25

Methyltransf_11

PF13847 Methyltransf_31 50-163 aa PF13649 Methyltransf_25 55-155 aa PF08241 Methyltransf_11 56-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790033.1`	Pfam	`PF13847`	Methyltransf_31	Domain	50	163	3.9e-12	46.9	Methyltransferase domain
`XP_057790033.1`	Pfam	`PF13649`	Methyltransf_25	Domain	55	155	1.3e-11	45.7	Methyltransferase domain
`XP_057790033.1`	Pfam	`PF08241`	Methyltransf_11	Domain	56	158	5.2e-13	50.2	Methyltransferase domain
`XP_057790034.1`	Pfam	`PF13847`	Methyltransf_31	Domain	50	163	3.9e-12	46.9	Methyltransferase domain
`XP_057790034.1`	Pfam	`PF13649`	Methyltransf_25	Domain	55	155	1.3e-11	45.7	Methyltransferase domain
`XP_057790034.1`	Pfam	`PF08241`	Methyltransf_11	Domain	56	158	5.2e-13	50.2	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934050.1
GTCAACGTTCACAATCACAAACAAACTGTACATTATGCTTCTGCCACTTGTACCTTCCTCTCTATCCATTTCTTCTTCAGTTCTTTTTCCACTAGTCTATCTAGAAACCAGACAAGACAAACCGTAGACTTCATTTGTACTCTCTCTCTCTCTCTCAACTGACAAACCCCACGACCCGCCACCAACCTCCCACCGCCGCCGCATCTCGGCCACAATGTTCAGGGACGTCTCGGCGTGCAGCACCTACAACTACGGCGACG...

XM_057934051.1
GTCAACGTTCACAATCACAAACAAACTGTACATTATGCTTCTGCCACTTGTACCTTCCTCTCTATCCATTTCTTCTTCAGTTCTTTTTCCACTAGTCTATCTAGAAACCAGACAAGACAAACCGTAGACTTCATTTGTACTCTCTCTCTCTCTCTCAACTGACAAACCCCACGACCCGCCACCAACCTCCCACCGCCGCCGCATCTCGGCCACAATGTTCAGGGACGTCTCGGCGTGCAGCACCTACAACTACGGCGACG...

CDS

2 records

下载 CDS FASTA

LOC131006908
ATGTTCAGGGACGTCTCGGCGTGCAGCACCTACAACTACGGCGACGCCCTCTACTGGGACGCCCGTTACATTCAAGAAGTCGAATGCGGCTCCTTCGATTGGTACCAGCGCTATTCAGCTCTGCGTCCCTTTATACGCAAATATATCCACCCTAATTCGCGCGTGCTCATGGTTGGTTGTGGAAATGCTGTTATCTCGGAGGACATGGTTAAAGATGGGTTCGAGGATATAATGAACATCGACATATCTTCTGTGGCTAT...

Protein

2 records

下载 Protein FASTA

XP_057790033.1
MFRDVSACSTYNYGDALYWDARYIQEVECGSFDWYQRYSALRPFIRKYIHPNSRVLMVGCGNAVISEDMVKDGFEDIMNIDISSVAIEMMRKKYESVPQLKYIQMDVRDMSLFPDDSYESVIDKGTLDSLMCGTDAPLSASQMLGEVSRLLKPGGVYMLITYGDPNVRMPHINRSVYNWKIELYIIPARPGFQKPGGATALRSHLDPIPLTEKGLLPADYVMEDPDSHFIYVCKKVDVPTDLSNKSADDTMKR

XP_057790034.1
MFRDVSACSTYNYGDALYWDARYIQEVECGSFDWYQRYSALRPFIRKYIHPNSRVLMVGCGNAVISEDMVKDGFEDIMNIDISSVAIEMMRKKYESVPQLKYIQMDVRDMSLFPDDSYESVIDKGTLDSLMCGTDAPLSASQMLGEVSRLLKPGGVYMLITYGDPNVRMPHINRSVYNWKIELYIIPRPGFQKPGGATALRSHLDPIPLTEKGLLPADYVMEDPDSHFIYVCKKVDVPTDLSNKSADDTMKR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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