Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000949`

染色体: Chr01 坐标: 20107984-20115646 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000949`
名称	SmilChr01G000949
描述	glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	20107984 - 20115646 / `-`

ID 对照

NCBI Gene ID	`LOC131006917`
GeneID	`131006917`
locus_tag	`-`
NCBI Name	`LOC131006917`
原始查询	`SmilChr01G000949`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1-like
产物	glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1-like
Arabidopsis	`AT3G24090` (GFAT) putative glucosamine-fructose-6-phosphate aminotransferase [Source:NCBI gene (formerly Entrezgene);Acc:821995] identity=80.6; qcov=1; evalue=0; confidence=high
Rice	`Os12g0131100` - identity=82.2; qcov=0.471; evalue=0; confidence=medium
GO	GO:0004360 (L-glutamine:D-fructose-6-phosphate transaminase (isomerizing) activity); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006047 (UDP-N-acetylglucosamine metabolic process); GO:0006487 (protein N-linked glycosylation); GO:0097367 (carbohydrate derivative binding)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01380 (SIS); PF13522 (GATase_6); PF13537 (GATase_7)
InterPro	-
eggNOG	-
NR	GeneID:131006917

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790039.1`
2	Cytosol	细胞质基质	1.00000	`XP_057790039.1`
3	Nucleus	细胞核	0.00000	`XP_057790039.1`
4	Chromosome	染色体	0.00000	`XP_057790039.1`
5	Centromere	着丝粒	0.00000	`XP_057790039.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:20108564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,B63,C1,C40
`Chr1:20108814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B138,B22,C38
`Chr1:20109095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:20109144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B59,B71,C71,D11
`Chr1:20109172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr1:20109185`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B129,B64,B87
`Chr1:20109185`	`TC`	`T`	1bp_deletion	CDS_variant	3	B129,B64,B87
`Chr1:20109188`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B129,B64,B87
`Chr1:20109188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B64,B87
`Chr1:20109190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B64,B87
`Chr1:20109282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr1:20109375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,B63,C1,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790039.1

679 aa

340

679

GATase_6

GATase_7

SIS

PF13522 GATase_6 86-154 aa PF13537 GATase_7 101-192 aa PF01380 SIS 359-487 aa PF01380 SIS 530-661 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790039.1`	Pfam	`PF13522`	GATase_6	Domain	86	154	3.4e-12	46.9	Glutamine amidotransferase domain
`XP_057790039.1`	Pfam	`PF13537`	GATase_7	Domain	101	192	1.9e-09	38.3	Glutamine amidotransferase domain
`XP_057790039.1`	Pfam	`PF01380`	SIS	Domain	359	487	3.7e-54	182.7	SIS domain
`XP_057790039.1`	Pfam	`PF01380`	SIS	Domain	530	661	3.7e-54	182.7	SIS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934056.1
AATCGACCAGTCAAAACTGTAGTTCTGTCTTTCCACTCACTCTCTCTTCTCTTCTCTTGACAGTTATTTATATTTCTGCAAATCATTCATCAACCACCGCGCCAAAAAAGAAGAAGAATGTGTGGGATCTTTGCTTACCTAAATTTCAATGTGAGCAGACAGCGACGCTACATTTTGGAGGTGCTTTTCAATGGCCTCCGCCGCTTGGAGTACCGAGGCTATGATTCCGCCGGCATTTCTGTTGACTCCGCCCTCAATCC...

CDS

1 records

下载 CDS FASTA

LOC131006917
ATGTGTGGGATCTTTGCTTACCTAAATTTCAATGTGAGCAGACAGCGACGCTACATTTTGGAGGTGCTTTTCAATGGCCTCCGCCGCTTGGAGTACCGAGGCTATGATTCCGCCGGCATTTCTGTTGACTCCGCCCTCAATCCCGCACATCCGCCTCTCGTCTTCCGCCAGGCAGGCAACATCAACTCACTTGTCAAAGCAGTCTACCATGAGGCTTCCGTTATGGAGTTAAATTTGGAAGAGTCCTTCCCGATGCACGC...

Protein

1 records

下载 Protein FASTA

XP_057790039.1
MCGIFAYLNFNVSRQRRYILEVLFNGLRRLEYRGYDSAGISVDSALNPAHPPLVFRQAGNINSLVKAVYHEASVMELNLEESFPMHAGIAHTRWATHGEPSPRNSHPQTSDPGNEFLVVHNGIITNYEVLKETLVRHGFTFESETDTEVIAKLAKFIYNNTNEEGSSSMTFSQLILEVMRHLEGAYALIFKSRHFPHELVACKRGSPLLLGVKELNEKAMAEPSFNDTDFLSSNGQPKELFLSSDASAVVEHTKKVLVIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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