Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000962`

染色体: Chr01 坐标: 20401123-20430750 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000962`
名称	SmilChr01G000962
描述	phenylacetaldehyde reductase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	20401123 - 20430750 / `+`

ID 对照

NCBI Gene ID	`LOC131006926`
GeneID	`131006926`
locus_tag	`-`
NCBI Name	`LOC131006926`
原始查询	`SmilChr01G000962`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylacetaldehyde reductase-like
产物	phenylacetaldehyde reductase-like
Arabidopsis	`AT5G19440` (AT5G19440) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832064] identity=59.5; qcov=0.967; evalue=2.43e-131; confidence=high
Rice	`Os01g0528800` (CADL) - identity=55.5; qcov=0.994; evalue=1.17e-127; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131006926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057790049.1`
2	Cytoplasm	细胞质	0.80000	`XP_057790049.1`
3	Nucleus	细胞核	0.00000	`XP_057790049.1`
4	Chromosome	染色体	0.00000	`XP_057790049.1`
5	Centromere	着丝粒	0.00000	`XP_057790049.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:20411200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:20411247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:20411255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B48,D2
`Chr1:20411265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:20428881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:20429333`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B32
`Chr1:20429333`	`T`	`TA`	1bp_insertion	CDS_variant	1	B32
`Chr1:20429511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr1:20429597`	`GA`	`G`	1bp_deletion	frameshift_variant	7	C1,C20,C44,C57,C70,C86,D5
`Chr1:20429599`	`TGC`	`T`	2bp_deletion	frameshift_variant	7	C1,C20,C44,C57,C70,C86,D5
`Chr1:20430466`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	B37,C13,C19,C26,C82,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790049.1

333 aa

166

333

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 3-104 aa PF01370 Epimerase 6-246 aa PF16363 GDP_Man_Dehyd 8-188 aa PF07993 NAD_binding_4 8-216 aa PF01073 3Beta_HSD 8-256 aa PF13460 NAD_binding_10 10-190 aa

XP_057790050.1

332 aa

166

332

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 3-104 aa PF01370 Epimerase 6-246 aa PF16363 GDP_Man_Dehyd 8-188 aa PF07993 NAD_binding_4 8-216 aa PF01073 3Beta_HSD 8-257 aa PF13460 NAD_binding_10 10-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790049.1`	Pfam	`PF05368`	NmrA	Family	3	104	1.5e-08	35.3	NmrA-like family
`XP_057790049.1`	Pfam	`PF01370`	Epimerase	Family	6	246	9.1e-24	84.9	NAD dependent epimerase/dehydratase family
`XP_057790049.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	8	188	1.7e-11	44.9	GDP-mannose 4,6 dehydratase
`XP_057790049.1`	Pfam	`PF07993`	NAD_binding_4	Family	8	216	5.6e-16	59.2	Male sterility protein
`XP_057790049.1`	Pfam	`PF01073`	3Beta_HSD	Family	8	256	5.3e-16	59.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057790049.1`	Pfam	`PF13460`	NAD_binding_10	Domain	10	190	3.5e-11	44.0	NAD(P)H-binding
`XP_057790050.1`	Pfam	`PF05368`	NmrA	Family	3	104	1.5e-08	35.3	NmrA-like family
`XP_057790050.1`	Pfam	`PF01370`	Epimerase	Family	6	246	9.1e-24	84.9	NAD dependent epimerase/dehydratase family
`XP_057790050.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	8	188	4.2e-11	43.6	GDP-mannose 4,6 dehydratase
`XP_057790050.1`	Pfam	`PF07993`	NAD_binding_4	Family	8	216	5.6e-16	59.2	Male sterility protein
`XP_057790050.1`	Pfam	`PF01073`	3Beta_HSD	Family	8	257	5.2e-16	59.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057790050.1`	Pfam	`PF13460`	NAD_binding_10	Domain	10	190	3.5e-11	44.0	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934066.1
AGGAAGTCATCTCATTTATTCTGGTCTGTATTTGGCCAAACGCCCATCAAAAGAGAAAAAAGGAAAGTGACAAAAGAAGTAGGAAATTTTTCTAAACAAATTACTCCAAAAAGAAAAGAAACAAAATATATTGATGGTGAGAGGAGATGATGGAGCGGGGCCCACCCAAGCTTGATTTCAGATCATGTGGTGCAGAAATAGTCATATAGCAGTATATATGTAGCAGGAGAGCAAGAAGATTTAGAAAGTAGAAAATAGTT...

XM_057934067.1
CATCTCATTTATTCTGGTCTGTATTTGGCCAAACGCCCATCAAAAGAGAAAAAAGGAAAGTGACAAAAGAAGTAGGAAATTTTTCTAAACAAATTACTCCAAAAAGAAAAGAAACAAAATATATTGATGGTGAGAGGAGATGATGGAGCGGGGCCCACCCAAGCTTGATTTCAGATCATGTGGTGCAGAAATAGTCATATAGCAGTATATATGTAGCAGGAGAGCAAGAAGATTTAGAAAGTAGAAAATAGTTAAATTAA...

CDS

2 records

下载 CDS FASTA

LOC131006926
ATGGGCGATAAGGTGGTGTGCGTCACCGGAGCTTCGGGCTACGTTGCTTCATGGCTGGTTAAACTCTTGCTCCGCCGTGGTTACACTGTCAAGGCTACTGTTCGTAACCTCAGTGATCCAAGCAAGGTAGGGCACTTGAGAGCACTTGAAGGAGCTGAAGAAAGACTGCATTTGTTTGAAGCAAATTTAGTGAAAGAAGGATCATTTGATGGTGTGATTGATGGTTGTGATGGCGTTTTTCACACTGCATCTCCTGTTAT...

Protein

2 records

下载 Protein FASTA

XP_057790049.1
MGDKVVCVTGASGYVASWLVKLLLRRGYTVKATVRNLSDPSKVGHLRALEGAEERLHLFEANLVKEGSFDGVIDGCDGVFHTASPVILEHVNDPQVELIQPAVKGTLNVLSSCAKAQSVKRVVFTSSIATIAYKKHTQTTDVLVDETSFSDPIFAEEMKQWYVVSKTLAEEAAFKFAQENGIDLVIINPGLVIGPLLQPTLNETSQCFLSLISEGKYTNATPGGMFIYVDVRDVGNAHILAFEDSSANGRYCLVANVMPC...

XP_057790050.1
MGDKVVCVTGASGYVASWLVKLLLRRGYTVKATVRNLSDPSKVGHLRALEGAEERLHLFEANLVKEGSFDGVIDGCDGVFHTASPVILEHVNDPQVELIQPAVKGTLNVLSSCAKAQSVKRVVFTSSIATIAYKKHTQTTDVLVDETSFSDPIFAEEMKQWYVVSKTLAEEAAFKFAQENGIDLVIINPGLVIGPLLQPTLNETSQCFLSLISEGKYTNATPGGMFIYVDVRDVGNAHILAFEDSSANGRYCLVANVMPC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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