当前解析结果
SmilChr01G000973| 统一新 Gene ID | SmilChr01G000973 |
|---|---|
| 名称 | SmilChr01G000973 |
| 描述 | protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 20590675 - 20594808 / + |
| NCBI Gene ID | LOC131006937 |
|---|---|
| GeneID | 131006937 |
| locus_tag | - |
| NCBI Name | LOC131006937 |
| 原始查询 | SmilChr01G000973 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like |
| 产物 | protein CHAPERONE-LIKE PROTEIN OF POR1%2C chloroplastic-like |
| Arabidopsis | AT5G23040 (CDF1)cell growth defect factor-like protein (DUF3353) [Source:NCBI gene (formerly Entrezgene);Acc:832368] identity=72.2; qcov=0.854; evalue=1.67e-116; confidence=high |
| Rice | Os09g0380200 (OsV5A)- identity=64.1; qcov=0.783; evalue=1.71e-91; confidence=high |
| GO | GO:0031969 (chloroplast membrane) |
| KEGG | - |
| Pfam | PF11833 (CPP1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006937 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057790055.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057790055.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057790055.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057790055.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:20591531 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:20591564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:20591685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B140 |
Chr1:20591700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C9 |
Chr1:20592164 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B100,B140,C79,D7 |
Chr1:20592164 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B100,B140,C79,D7 |
Chr1:20592178 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B51 |
Chr1:20592178 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B51 |
Chr1:20592197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B140,D7 |
Chr1:20592255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:20592315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:20592437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790055.1PF11833
CPP1-like 73-252 aa
XP_057790056.1PF11833
CPP1-like 73-252 aa
XP_057790057.1PF11833
CPP1-like 73-252 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790055.1 |
Pfam | PF11833 |
CPP1-like | Family | 73 | 252 | 3.4e-59 | 200.5 | Protein CHAPERONE-LIKE PROTEIN OF POR1-like |
XP_057790056.1 |
Pfam | PF11833 |
CPP1-like | Family | 73 | 252 | 3.4e-59 | 200.5 | Protein CHAPERONE-LIKE PROTEIN OF POR1-like |
XP_057790057.1 |
Pfam | PF11833 |
CPP1-like | Family | 73 | 252 | 3.4e-59 | 200.5 | Protein CHAPERONE-LIKE PROTEIN OF POR1-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。