Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000974`

染色体: Chr01 坐标: 20596198-20600849 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000974`
名称	SmilChr01G000974
描述	protein HEAT STRESS TOLERANT DWD 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	20596198 - 20600849 / `-`

ID 对照

NCBI Gene ID	`LOC131006938`
GeneID	`131006938`
locus_tag	`-`
NCBI Name	`LOC131006938`
原始查询	`SmilChr01G000974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein HEAT STRESS TOLERANT DWD 1-like
产物	protein HEAT STRESS TOLERANT DWD 1-like
Arabidopsis	`AT2G19540` (AT2G19540) Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:816473] identity=73.4; qcov=0.984; evalue=0; confidence=high
Rice	`Os11g0134500` (OsWD40-182) - identity=66.8; qcov=0.976; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF12265 (CAF1C_H4-bd)
InterPro	-
eggNOG	-
NR	GeneID:131006938

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790058.1`
2	Nucleoplasm	核质	0.80000	`XP_057790058.1`
3	Cytoplasm	细胞质	0.40000	`XP_057790059.1`
4	Cytosol	细胞质基质	0.40000	`XP_057790059.1`
5	Chromosome	染色体	0.20000	`XP_057790058.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:20596647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:20596892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr1:20596919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:20597057`	`A`	`AC`	1bp_insertion	frameshift_variant	1	B104
`Chr1:20597057`	`A`	`AC`	1bp_insertion	CDS_variant	1	B104
`Chr1:20597261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B140
`Chr1:20597301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C20,C44
`Chr1:20597458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C1,C44,C57
`Chr1:20597489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr1:20597690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B39,B86,C40,C79
`Chr1:20597857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B110,C50
`Chr1:20598422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790058.1

476 aa

238

476

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 50-115 aa PF00400 WD40 273-306 aa PF00400 WD40 315-348 aa PF00400 WD40 361-397 aa

XP_057790059.1

443 aa

222

443

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 17-82 aa PF00400 WD40 240-273 aa PF00400 WD40 282-315 aa PF00400 WD40 328-364 aa

XP_057790060.1

382 aa

191

382

WD40

PF00400 WD40 179-212 aa PF00400 WD40 221-254 aa PF00400 WD40 267-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790058.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	50	115	6.6e-12	46.2	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057790058.1`	Pfam	`PF00400`	WD40	Repeat	273	306	7e-19	68.1	WD domain, G-beta repeat
`XP_057790058.1`	Pfam	`PF00400`	WD40	Repeat	315	348	7e-19	68.1	WD domain, G-beta repeat
`XP_057790058.1`	Pfam	`PF00400`	WD40	Repeat	361	397	7e-19	68.1	WD domain, G-beta repeat
`XP_057790059.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	17	82	5.4e-12	46.5	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057790059.1`	Pfam	`PF00400`	WD40	Repeat	240	273	4.4e-19	68.8	WD domain, G-beta repeat
`XP_057790059.1`	Pfam	`PF00400`	WD40	Repeat	282	315	4.4e-19	68.8	WD domain, G-beta repeat
`XP_057790059.1`	Pfam	`PF00400`	WD40	Repeat	328	364	4.4e-19	68.8	WD domain, G-beta repeat
`XP_057790060.1`	Pfam	`PF00400`	WD40	Repeat	179	212	2.2e-19	69.7	WD domain, G-beta repeat
`XP_057790060.1`	Pfam	`PF00400`	WD40	Repeat	221	254	2.2e-19	69.7	WD domain, G-beta repeat
`XP_057790060.1`	Pfam	`PF00400`	WD40	Repeat	267	303	2.2e-19	69.7	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057934075.1
AGCCGTGTAAACTATTTTAAGTCGCAAGAACTTTCAATTACTTTTTGGGGGGCGTCACTAGATTACTCTTACTACAATAAACCCTAATTGCAAAACCCTTCTGCAAATCCAGTTTCCCCTCACCTCCATTGTCTCAATCCTCCAAATTCAAAAATGGTCCGGAGCTTGAAGAATCCCAAAAAGGCAAAACGCAAAAACAAGGGCTCAGGCTCGAAGAAAGACGAAGGATCATCATCAAATTCGGGGCCGACGATGCCGGC...

XM_057934076.1
GTCACTAGATTACTCTTACTACAATAAACCCTAATTGCAAAACCCTTCTGCAAATCCAGTTTCCCCTCACCTCCATTGTCTCAATCCTCCAAATTCAAAAATGGTCCGGAGCTTGAAGAATCCCAAAAAGGCAAAACGCAAAAACAAGGCTCGAAGAAAGACGAAGGATCATCATCAAATTCGGGGCCGACGATGCCGGCAAAAGTGTGGCAACCGGGCGTGGACGCATTGGAAGACGGAGAGGAGCTTCAGTGCGACCT...

CDS

3 records

下载 CDS FASTA

LOC131006938
ATGGTCCGGAGCTTGAAGAATCCCAAAAAGGCAAAACGCAAAAACAAGGGCTCAGGCTCGAAGAAAGACGAAGGATCATCATCAAATTCGGGGCCGACGATGCCGGCAAAAGTGTGGCAACCGGGCGTGGACGCATTGGAAGACGGAGAGGAGCTTCAGTGCGACCTGTCTGCTTACAATTCTTATCACGGTTTTCACATTGGATGGCCTTGTTTGAGTTTTGATATTCTGCGTGATTCTTTGGGCTTGGTGCGCACTGA...

LOC131006938
ATGCCGGCAAAAGTGTGGCAACCGGGCGTGGACGCATTGGAAGACGGAGAGGAGCTTCAGTGCGACCTGTCTGCTTACAATTCTTATCACGGTTTTCACATTGGATGGCCTTGTTTGAGTTTTGATATTCTGCGTGATTCTTTGGGCTTGGTGCGCACTGAGTTTCCACACACCGTCTATTCCATTGCAGGAACACAGGCAGAGAAGTCCTCCTGGAACTACATTGGAATATTTAAAATCTTAAATGTTTCTGGCAAGAG...

Protein

3 records

下载 Protein FASTA

XP_057790058.1
MVRSLKNPKKAKRKNKGSGSKKDEGSSSNSGPTMPAKVWQPGVDALEDGEELQCDLSAYNSYHGFHIGWPCLSFDILRDSLGLVRTEFPHTVYSIAGTQAEKSSWNYIGIFKILNVSGKRRDLVPKKSKNEDTDMESDSSDSDEDDEEEGGGTKTPVLQVRKVSHEGGVNRIRAMVQHPHICASWADTGLVQVWDFSSHLHALGEADTATNNGGSIVFNQAPLVKFAGHKDEGYAIDWSPVVPGRLVSGDCKNCIHLWEP...

XP_057790059.1
MPAKVWQPGVDALEDGEELQCDLSAYNSYHGFHIGWPCLSFDILRDSLGLVRTEFPHTVYSIAGTQAEKSSWNYIGIFKILNVSGKRRDLVPKKSKNEDTDMESDSSDSDEDDEEEGGGTKTPVLQVRKVSHEGGVNRIRAMVQHPHICASWADTGLVQVWDFSSHLHALGEADTATNNGGSIVFNQAPLVKFAGHKDEGYAIDWSPVVPGRLVSGDCKNCIHLWEPASESTWNIDSTPFVGHTASVEDLQWSPTEPYVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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