Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001004`

染色体: Chr01 坐标: 21164476-21171847 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001004`
名称	SmilChr01G001004
描述	putative laccase-9
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	21164476 - 21171847 / `+`

ID 对照

NCBI Gene ID	`LOC131006961`
GeneID	`131006961`
locus_tag	`-`
NCBI Name	`LOC131006961`
原始查询	`SmilChr01G001004`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative laccase-9
产物	putative laccase-9
Arabidopsis	`AT5G09360` (LAC14) laccase 14 [Source:NCBI gene (formerly Entrezgene);Acc:830795] identity=49.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0749700` (OsLAC10) - identity=51; qcov=1.05; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity)
KEGG	-
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:131006961

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057790085.1`
2	Nucleus	细胞核	0.00000	`XP_057790085.1`
3	Chromosome	染色体	0.00000	`XP_057790085.1`
4	Centromere	着丝粒	0.00000	`XP_057790085.1`
5	Chromatin	染色质	0.00000	`XP_057790085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:21165326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C22,C67
`Chr1:21165380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B64,B76
`Chr1:21165727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,D7
`Chr1:21165734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr1:21169960`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B104
`Chr1:21169960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:21170157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,B8,C22
`Chr1:21170172`	`TC`	`T`	1bp_deletion	frameshift_variant	20	A14,A19,B101,B132,B15,B17,B18,B32,B41,B49,B52,B63,B75,C16,C35,C4,C50,C60,C69,C87
`Chr1:21170322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:21170452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C25,C37
`Chr1:21170508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,D7
`Chr1:21170563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790085.1

562 aa

281

562

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 37-148 aa PF00394 Cu-oxidase 164-311 aa PF07731 Cu-oxidase_2 436-545 aa

XP_057790086.1

514 aa

257

514

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 1-100 aa PF00394 Cu-oxidase 116-263 aa PF07731 Cu-oxidase_2 388-497 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790085.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	37	148	3e-39	134.5	Multicopper oxidase
`XP_057790085.1`	Pfam	`PF00394`	Cu-oxidase	Domain	164	311	1.5e-38	133.1	Multicopper oxidase
`XP_057790085.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	436	545	1.3e-40	139.1	Multicopper oxidase
`XP_057790086.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	1	100	3.9e-37	127.6	Multicopper oxidase
`XP_057790086.1`	Pfam	`PF00394`	Cu-oxidase	Domain	116	263	1.3e-38	133.3	Multicopper oxidase
`XP_057790086.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	388	497	1.4e-40	138.9	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934102.1
CTATTCGCACAGAAGCCGAACTTCCGGCCTGATCCAGTTCCGCAAAATCTCGGTGCCGCCGCACCCCTCTGAAGAAAGCGTGGCTCGAAATCTACGAGGAGATGAAAATCGAGATCCGGATGAATCTCAAGGCGCGCAGGGTCGAGCGAGCAACCTGCAGAAGTGCGCTGACTTCGCGCACGCCTTCATGCTCCGGATGGATGAGCTCTACGTTTAGTCGTTCGAGATCAAGGACGTGAAGACGTTGAAAGGGGAGCACC...

XM_057934103.1
CTATTCGCACAGAAGCCGAACTTCCGGCCTGATCCAGTTCCGCAAAATCTCGGTGCCGCCGCACCCCTCTGAAGAAAGCGTGGCTCGAAATCTACGAGGAGATGAAAATCGAGATCCGGATGAATCTCAAGGCGCGCAGGGTCGAGCGAGCAACCTGCAGAAGTGCGCTGACTTCGCGCACGCCTTCATGCTCCGGATGGATGAGCTCTACGTTTAGTCGTTCGAGATCAAGGACGTGAAGACGTTGAAAGGGGAGCACC...

CDS

2 records

下载 CDS FASTA

LOC131006961
ATGTTTTCGGCTACAAAGGCCTTCATTCTGTGCTACTTAGGTGTTATTATGATTGGAGGCGCAACGCAAGTTAATGCTTCAATTCGTTGTTGTACGTTTGAAGTGGTAAATTCTGCGCACACTAGACTATGCACCAAAAAGACTATGCTGACCATAAATGGACAGTTCCCGGGGCCAACCATATATGCTAGGAGGGGAGATCTGATTACAATGAATATTGTGAATCGCGCCGATCAAAATATCAGCATCCACTGGCATGG...

LOC131006961
ATGCTGACCATAAATGGACAGTTCCCGGGGCCAACCATATATGCTAGGAGGGGAGATCTGATTACAATGAATATTGTGAATCGCGCCGATCAAAATATCAGCATCCACTGGCATGGAGTAAAAATGCCCCAGTATCCATGGTCAGATGGCACCAACTATGTGACGCAGTGCCCAATTGAACCTGGACAAAAGTTTACCCAACAAATTATTCTCTCCGACGAGGAAGGCACATTGTGGTGGCACGCTCACAGCGATTGGGC...

Protein

2 records

下载 Protein FASTA

XP_057790085.1
MFSATKAFILCYLGVIMIGGATQVNASIRCCTFEVVNSAHTRLCTKKTMLTINGQFPGPTIYARRGDLITMNIVNRADQNISIHWHGVKMPQYPWSDGTNYVTQCPIEPGQKFTQQIILSDEEGTLWWHAHSDWARNSVYGAIVILPPRTESFPFPIPHAHFPPILIGEWWNTEIETVFKEFLETGGDPEVSNAFLFNGQPGDLYPCSNQDTYKLRVEYGKTYLIKLVNAALDNIMFFKIANHELTVVGADGAYTKPLTT...

XP_057790086.1
MLTINGQFPGPTIYARRGDLITMNIVNRADQNISIHWHGVKMPQYPWSDGTNYVTQCPIEPGQKFTQQIILSDEEGTLWWHAHSDWARNSVYGAIVILPPRTESFPFPIPHAHFPPILIGEWWNTEIETVFKEFLETGGDPEVSNAFLFNGQPGDLYPCSNQDTYKLRVEYGKTYLIKLVNAALDNIMFFKIANHELTVVGADGAYTKPLTTDYVAIPPGQTLDLLLEANQPPSHYYMATRMYTSKDVHSPTTPTTAIIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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