Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001019`

染色体: Chr01 坐标: 21359982-21363226 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001019`
名称	SmilChr01G001019
描述	uncharacterized SmilChr01G001019
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	21359982 - 21363226 / `+`

ID 对照

NCBI Gene ID	`LOC131006972`
GeneID	`131006972`
locus_tag	`-`
NCBI Name	`LOC131006972`
原始查询	`SmilChr01G001019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0798800; species=rice; confidence=medium
产物	hit=Os01g0798800; species=rice; confidence=medium
Arabidopsis	`AT5G45480` (AT5G45480) transmembrane protein, putative (DUF594) [Source:NCBI gene (formerly Entrezgene);Acc:834584] identity=39.9; qcov=0.52; evalue=1.68e-67; confidence=medium
Rice	`Os01g0798800` - identity=39.5; qcov=1.03; evalue=6.86e-155; confidence=medium
GO	-
KEGG	-
Pfam	PF04578 (DUF594); PF13968 (DUF4220)
InterPro	-
eggNOG	-
NR	GeneID:131006972

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790094.1`
2	Nucleus	细胞核	0.00000	`XP_057790094.1`
3	Chromosome	染色体	0.00000	`XP_057790094.1`
4	Centromere	着丝粒	0.00000	`XP_057790094.1`
5	Chromatin	染色质	0.00000	`XP_057790094.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:21360973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,C25
`Chr1:21360974`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,C25
`Chr1:21361047`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B41
`Chr1:21361047`	`GT`	`G`	1bp_deletion	CDS_variant	1	B41
`Chr1:21361049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr1:21361499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,D4
`Chr1:21361601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:21361777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:21361889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:21361916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:21362138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B29
`Chr1:21362312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,B63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790094.1

669 aa

334

669

DUF4220

DUF594

PF13968 DUF4220 55-395 aa PF04578 DUF594 600-651 aa

XP_057790095.1

669 aa

334

669

DUF4220

DUF594

PF13968 DUF4220 55-395 aa PF04578 DUF594 600-651 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790094.1`	Pfam	`PF13968`	DUF4220	Family	55	395	1.8e-86	291.6	Domain of unknown function (DUF4220)
`XP_057790094.1`	Pfam	`PF04578`	DUF594	Family	600	651	1.6e-24	86.0	Protein of unknown function, DUF594
`XP_057790095.1`	Pfam	`PF13968`	DUF4220	Family	55	395	1.8e-86	291.6	Domain of unknown function (DUF4220)
`XP_057790095.1`	Pfam	`PF04578`	DUF594	Family	600	651	1.6e-24	86.0	Protein of unknown function, DUF594

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934111.1
GTTTCTTTATAGTTTCCCAGAAACCAGACGTCAACTGCTACTTATATATCTCATTGTTCGCTTTCTGGTTTATATTAAAGATCATCAATACTTTTGCTGAACTTGCTTCTTTGATTATGCTCTCATAAGGTATTACAAAGGGATGAGAATTTCCCCAAAAAGTTGAAATCATCCAAACTACAGAACACTTGTTTTGGCTGATGGGAGAAGTTATGGAAGTATTCCTAGTAGGTTGGATAAACTTCTTGAATGAATGGCAA...

XM_057934112.1
CTTTATTTTGATATCTCCCCCTGAAAATTGTGACATTTCCTTATTTGGAAATAATTTTACAAACCATTTTTCTTACTATTTACAAAAAAGATTTGAGACCCAATTTCCACTCAAACATAAAAATTGGGGGAAATATAATGCTTACGCAAGGGCCATCCTATCCAACTTTTAGGCATTAAAATACGTTTCAAGCGCGGATGATTATCATAAGAGATTCCCAACATATCATAGGATTCTCGTTCTTGAAAATCCACGCTTTT...

CDS

2 records

下载 CDS FASTA

LOC131006972
ATGGGAGAAGTTATGGAAGTATTCCTAGTAGGTTGGATAAACTTCTTGAATGAATGGCAAGTGAGGATGTTCGTTATCCTGAGCCTAGCATTGCAAATTTTACTGGTGTTGTTGGGCAATCGCAGGAAGTATGTATGCAAGGTTTGGATAAGAATCATTATTTGGTGTGCGTACGTATTGGCAGATTGGGTGGCAGTGGTTTCCCTCGGCGTCATCGCCAAGAACACTCTTGATGCTTGCGAGAAGAGTATGAATGATAA...

Protein

2 records

下载 Protein FASTA

XP_057790094.1
MGEVMEVFLVGWINFLNEWQVRMFVILSLALQILLVLLGNRRKYVCKVWIRIIIWCAYVLADWVAVVSLGVIAKNTLDACEKSMNDKPGIQLNLFWAQFFLVHLGGPDTITAYSLEDNELWLRHLVGMLIHTGLAFYALLVAFPASDWLPYLNLLVFTAGSIKYGERVSTLCAASSENFRDSMLPQPNPGPDYAKFMERYTLKKAEGYNVAVDSVMDMPVLPRHDFPDPPGVPEAYHLFSTFKRLFAGSILSFEDRDCSK...

XP_057790095.1
MGEVMEVFLVGWINFLNEWQVRMFVILSLALQILLVLLGNRRKYVCKVWIRIIIWCAYVLADWVAVVSLGVIAKNTLDACEKSMNDKPGIQLNLFWAQFFLVHLGGPDTITAYSLEDNELWLRHLVGMLIHTGLAFYALLVAFPASDWLPYLNLLVFTAGSIKYGERVSTLCAASSENFRDSMLPQPNPGPDYAKFMERYTLKKAEGYNVAVDSVMDMPVLPRHDFPDPPGVPEAYHLFSTFKRLFAGSILSFEDRDCSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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