Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001031`

染色体: Chr01 坐标: 21469046-21474743 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001031`
名称	SmilChr01G001031
描述	uncharacterized SmilChr01G001031
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	21469046 - 21474743 / `-`

ID 对照

NCBI Gene ID	`LOC131006979`
GeneID	`131006979`
locus_tag	`-`
NCBI Name	`LOC131006979`
原始查询	`SmilChr01G001031`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0315200; species=rice; confidence=medium
产物	hit=Os08g0315200; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os08g0315200` - identity=35.1; qcov=0.458; evalue=2.86e-27; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid)
InterPro	-
eggNOG	-
NR	GeneID:131006979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057790098.1`
2	Nucleus	细胞核	0.60000	`XP_057790098.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057790098.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057790098.1`
5	Cytosol	细胞质基质	0.20000	`XP_057790098.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:21469465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B79,B9,C27,C3
`Chr1:21469583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:21469585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:21469605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:21469606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:21469613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr1:21469691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,D1
`Chr1:21469719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B9,C27,C3
`Chr1:21469720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B17,B25,C14,C27,D8
`Chr1:21469723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B46,B87,C62,C87
`Chr1:21469735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B9,C27,C3
`Chr1:21469756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,A3,B133,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790098.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 323-338 aa

XP_057790099.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 323-338 aa

XP_057790100.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 323-338 aa

XP_057790101.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 323-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790098.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	3.7e-09	37.0	Ty3 transposon capsid-like protein
`XP_057790098.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057790098.1`	Pfam	`PF00098`	zf-CCHC	Domain	323	338	1.2e-05	25.8	Zinc knuckle
`XP_057790099.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	3.7e-09	37.0	Ty3 transposon capsid-like protein
`XP_057790099.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057790099.1`	Pfam	`PF00098`	zf-CCHC	Domain	323	338	1.2e-05	25.8	Zinc knuckle
`XP_057790100.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	3.7e-09	37.0	Ty3 transposon capsid-like protein
`XP_057790100.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057790100.1`	Pfam	`PF00098`	zf-CCHC	Domain	323	338	1.2e-05	25.8	Zinc knuckle
`XP_057790101.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	3.7e-09	37.0	Ty3 transposon capsid-like protein
`XP_057790101.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057790101.1`	Pfam	`PF00098`	zf-CCHC	Domain	323	338	1.2e-05	25.8	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057934118.1
CTAGGTGTGTGCAGAATAGCTTTACAGCAATTTTACCACCTAGAGAGTTTTTTTTTTTAAGCCACCCTACGACAGCACCATCCACTCCACCAAACTTCCCACCACTCTTTGCTCCCCACCATCTTCAATTCTTTAAGACTACTAGTTCCTTCAACCACCAAAGGGAGGAGAATTCAATTACTGCTGCCAAACTTCGAACAGCTATCTCCTCATTAAATTCAATAGCAACAAACAGCCACCAACAACAAGCAATTACAGGT...

XM_057934117.1
CTAGGTGTGTGCAGAATAGCTTTACAGCAATTTTACCACCTAGAGAGTTTTTTTTTTTAAGCCACCCTACGACAGCACCATCCACTCCACCAAACTTCCCACCACTCTTTGCTCCCCACCATCTTCAATTCTTTAAGACTACTAGTTCCTTCAACCACCAAAGGGAGGAGAATTCAATTACTGCTGCCAAACTTCGAACAGCTATCTCCTCATTAAATTCAATAGCAACAAACAGCCACCAACAACAAGCAATTACAGGT...

CDS

4 records

下载 CDS FASTA

LOC131006979
ATGCTAGAGTGTACTAATTGGCACATCTTTGCTACCAGAATGCCGCCTAAGATAGGACGCCCTGTGAGAAACAATAACAATCGCAGAAACCGTAACGCTGTACCAGAAGAACCACAAAATGCTCGAGGACATAATCCATCCCCTCCGCCCCCGACTAGGAGAGTTGAAGAACTCTTTTTAAGGCAAAACCCACCTACGTTTGACGGAACGAGTGAACCGGCTGAAGCTGAGATTTGGGTGCGTGCAATGGAACGCATTTT...

Protein

4 records

下载 Protein FASTA

XP_057790098.1
MLECTNWHIFATRMPPKIGRPVRNNNNRRNRNAVPEEPQNARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGKKSVVEYDKEFCNLSRFAPQQVDTDDKMAEKFCAGLRHEIRMALASHGGLTYTESLNRALNIEAAMPSDKSAPPLISTPNDLPGASHTLKGKRKWDNNED...

XP_057790099.1
MLECTNWHIFATRMPPKIGRPVRNNNNRRNRNAVPEEPQNARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGKKSVVEYDKEFCNLSRFAPQQVDTDDKMAEKFCAGLRHEIRMALASHGGLTYTESLNRALNIEAAMPSDKSAPPLISTPNDLPGASHTLKGKRKWDNNED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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