当前解析结果
SmilChr01G001062| 统一新 Gene ID | SmilChr01G001062 |
|---|---|
| 名称 | SmilChr01G001062 |
| 描述 | noroxomaritidine synthase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 21929977 - 21931446 / + |
| NCBI Gene ID | LOC131007006 |
|---|---|
| GeneID | 131007006 |
| locus_tag | - |
| NCBI Name | LOC131007006 |
| 原始查询 | SmilChr01G001062 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | noroxomaritidine synthase-like |
| 产物 | noroxomaritidine synthase-like |
| Arabidopsis | AT2G23180 (CYP96A1)cytochrome P450, family 96, subfamily A, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:816850] identity=43.1; qcov=1.02; evalue=4.19e-143; confidence=medium |
| Rice | Os03g0140100 (MAH1)- identity=42.4; qcov=0.988; evalue=7.61e-138; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007006 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057790129.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057790129.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790129.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790129.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790129.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:21930008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,C32,C87 |
Chr1:21930044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr1:21930093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr1:21930096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C20,C44 |
Chr1:21930114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:21930149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr1:21930294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,D6 |
Chr1:21930302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:21930313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,C59,C62 |
Chr1:21930353 |
T |
TCG |
2bp_insertion | frameshift_variant | 2 | A8,B84 |
Chr1:21930353 |
T |
TCG |
2bp_insertion | CDS_variant | 2 | A8,B84 |
Chr1:21930468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790129.1PF00067
p450 27-471 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790129.1 |
Pfam | PF00067 |
p450 | Domain | 27 | 471 | 2.1e-44 | 152.8 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。