Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001075

染色体: Chr01 坐标: 22163944-22168094 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001075
名称SmilChr01G001075
描述cytochrome b5 domain-containing protein RLF-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向22163944 - 22168094 / +

ID 对照

NCBI Gene IDLOC131007018
GeneID131007018
locus_tag-
NCBI NameLOC131007018
原始查询SmilChr01G001075

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytochrome b5 domain-containing protein RLF-like
产物cytochrome b5 domain-containing protein RLF-like
ArabidopsisAT5G09680 (RLF)
reduced lateral root formation [Source:NCBI gene (formerly Entrezgene);Acc:830827]
identity=63; qcov=0.879; evalue=4.92e-81; confidence=high
RiceOs07g0232200
-
identity=84.3; qcov=0.558; evalue=1.9e-71; confidence=medium
GOGO:0020037 (heme binding)
KEGG-
PfamPF00173 (Cyt-b5)
InterPro-
eggNOG-
NRGeneID:131007018

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057790145.1
2 Cytoplasm 细胞质 1.00000 XP_057790146.1
3 Nucleus 细胞核 0.40000 XP_057790146.1
4 Nucleoplasm 核质 0.20000 XP_057790145.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057790145.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:22164765 C T EMS_canonical_SNV CDS_variant 1 C52
Chr1:22164819 AT A 1bp_deletion frameshift_variant 1 D10
Chr1:22164819 AT A 1bp_deletion CDS_variant 1 D10
Chr1:22164821 G A EMS_canonical_SNV CDS_variant 1 D10
Chr1:22164935 G A EMS_canonical_SNV CDS_variant 1 C30
Chr1:22167617 G A EMS_canonical_SNV CDS_variant 1 C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790145.1
226 aa
N
1
113
226
Cyt-b5
C
PF00173 Cyt-b5 152-222 aa
XP_057790146.1
207 aa
N
1
104
207
Cyt-b5
C
PF00173 Cyt-b5 133-203 aa
XP_057790147.1
206 aa
N
1
103
206
Cyt-b5
C
PF00173 Cyt-b5 132-202 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790145.1 Pfam PF00173 Cyt-b5 Domain 152 222 2.4e-22 79.5 Cytochrome b5-like Heme/Steroid binding domain
XP_057790146.1 Pfam PF00173 Cyt-b5 Domain 133 203 2.1e-22 79.6 Cytochrome b5-like Heme/Steroid binding domain
XP_057790147.1 Pfam PF00173 Cyt-b5 Domain 132 202 2.1e-22 79.6 Cytochrome b5-like Heme/Steroid binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057934162.1
TATTATAACTGGAGCAACAAAATCTCAATAAATAAATCATCGAATGACGACCAACAAAAGAGAATTTTCCCCATCGAAGACCGGAAATTCCACCTACTGCAAGATCGTCTCCAATAAGACTACGCTCTCTCTCTCTGCGCCTACACACCCTCTAATTCTCTGTGATTTTCTGAATAGGCAAATATTAACATTTTCGTCCGCTTAAGATCATATTTTGGGAGAATGGCTGATGACGATGATTTCACCTTTTGTCCTGCTGG...
XM_057934164.1
AAATCTCAATAAATAAATCATCGAATGACGACCAACAAAAGAGAATTTTCCCCATCGAAGACCGGAAATTCCACCTACTGCAAGATCGTCTCCAATAAGACTACGCTCTCTCTCTCTGCGCCTACACACCCTCTAATTCTCTGTGATTTTCTGAATAGGCAAATATTAACATTTTCGTCCGCTTAAGATCATATTTTGGGAGAATGGCTGATGACGATGATTTCACCTTTTGTCCTTCAGATTCATATAGATGATAGCAA...

CDS

3 records

下载 CDS FASTA
LOC131007018
ATGGCTGATGACGATGATTTCACCTTTTGTCCTGCTGGACCACCTCTGGATGGTGCTGCAACTGACAAAGCTATTGATGCTGTTAGTCAGATTCATATAGATGATAGCAATGGGAATACAGCTGATAGGAGTAGTAAGCAGAATAGTGGTGGTACCATATGGAAAGTGAATGCTTCCTCGCAGAAGCAGGAAACTGTTGGCTCTCTCTCTTTTAATGTGATTGATGCTTCAACTCGTGGAGCAGTAGACCAACGGCCCAA...
LOC131007018
ATGGCTGATGACGATGATTTCACCTTTTGTCCTATTCATATAGATGATAGCAATGGGAATACAGCTGATAGGAGTAGTAAGCAGAATAGTGGTGGTACCATATGGAAAGTGAATGCTTCCTCGCAGAAGCAGGAAACTGTTGGCTCTCTCTCTTTTAATGTGATTGATGCTTCAACTCGTGGAGCAGTAGACCAACGGCCCAAACAACCAATACAAGAGGATTCTGGAAGTTCAGCTAAGGCTTCAGTGGCACTGAAGGC...

Protein

3 records

下载 Protein FASTA
XP_057790145.1
MADDDDFTFCPAGPPLDGAATDKAIDAVSQIHIDDSNGNTADRSSKQNSGGTIWKVNASSQKQETVGSLSFNVIDASTRGAVDQRPKQPIQEDSGSSAKASVALKAPPKKPATRTKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNKRLISLNEVKQHQSEGSMWTVLKGRVYNIAPYLKFHPGGLDILMKAVGKDCTSLFNKYHAWVNAEFLLEKCLVGILDEGK
XP_057790146.1
MADDDDFTFCPIHIDDSNGNTADRSSKQNSGGTIWKVNASSQKQETVGSLSFNVIDASTRGAVDQRPKQPIQEDSGSSAKASVALKAPPKKPATRTKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNKRLISLNEVKQHQSEGSMWTVLKGRVYNIAPYLKFHPGGLDILMKAVGKDCTSLFNKYHAWVNAEFLLEKCLVGILDEGK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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