Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001077`

染色体: Chr01 坐标: 22195839-22202144 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001077`
名称	SmilChr01G001077
描述	uncharacterized SmilChr01G001077
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	22195839 - 22202144 / `+`

ID 对照

NCBI Gene ID	`LOC131007019`
GeneID	`131007019`
locus_tag	`-`
NCBI Name	`LOC131007019`
原始查询	`SmilChr01G001077`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0544600; species=rice; confidence=medium
产物	hit=Os12g0544600; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os12g0544600` - identity=42; qcov=0.565; evalue=8.41e-98; confidence=medium
GO	-
KEGG	-
Pfam	PF02992 (Transposase_21); PF13952 (DUF4216); PF13960 (DUF4218); PF13963 (Transpos_assoc)
InterPro	-
eggNOG	-
NR	GeneID:131007019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790148.1`
2	Telomere	端粒	0.20000	`XP_057790148.1`
3	Chromosome	染色体	0.00000	`XP_057790148.1`
4	Centromere	着丝粒	0.00000	`XP_057790148.1`
5	Chromatin	染色质	0.00000	`XP_057790148.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:22197469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B38,B39,D6
`Chr1:22197583`	`AC`	`A`	1bp_deletion	frameshift_variant	4	B122,B38,B39,D6
`Chr1:22197583`	`AC`	`A`	1bp_deletion	CDS_variant	4	B122,B38,B39,D6
`Chr1:22197641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:22197687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:22197772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B38,B39,D6
`Chr1:22197827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B38,B39,D6
`Chr1:22197899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B135,B56,B83,B96,C77
`Chr1:22197933`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B65,B89,C16,C42,C84
`Chr1:22197933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B65,B89,C16,C42,C84
`Chr1:22197961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B72,C12,C47,C84
`Chr1:22197968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790148.1

1175 aa

588

1175

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 3-77 aa PF02992 Transposase_21 309-519 aa PF13960 DUF4218 714-826 aa PF13952 DUF4216 991-1064 aa

XP_057790149.1

699 aa

350

699

Transposase_21

DUF4218

DUF4216

PF02992 Transposase_21 1-43 aa PF13960 DUF4218 238-350 aa PF13952 DUF4216 515-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790148.1`	Pfam	`PF13963`	Transpos_assoc	Domain	3	77	3.3e-20	72.7	Transposase-associated domain
`XP_057790148.1`	Pfam	`PF02992`	Transposase_21	Family	309	519	1.9e-98	328.6	Transposase family tnp2
`XP_057790148.1`	Pfam	`PF13960`	DUF4218	Domain	714	826	3.3e-50	169.4	Domain of unknown function (DUF4218)
`XP_057790148.1`	Pfam	`PF13952`	DUF4216	Domain	991	1064	3e-22	79.7	Domain of unknown function (DUF4216)
`XP_057790149.1`	Pfam	`PF02992`	Transposase_21	Family	1	43	1.4e-08	34.9	Transposase family tnp2
`XP_057790149.1`	Pfam	`PF13960`	DUF4218	Domain	238	350	1.8e-50	170.3	Domain of unknown function (DUF4218)
`XP_057790149.1`	Pfam	`PF13952`	DUF4216	Domain	515	588	1.6e-22	80.6	Domain of unknown function (DUF4216)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934165.1
GGCATTTTTAAACTCTCAAAGTCATACTCTATCCCCTCTCTGAAGTGTTATCGTTCTCCCTCAAATTCCCTTTTCATCACAAAATCAAAATATATGCCTAGAATCAAATTTCCTCTCGCAAATACTCAAATATTTCGCTTTCTTTCCTCAATCCTTGAATTGAATTCATTGTCTCTAAGAAATTCTCTCTCAAATTCTGAACAACAAACTATAACCAGAACGAAGGAAGGGTACAAGAAATCAAGAATTTCGGAAAATCG...

XM_057934166.1
GGCATTTTTAAACTCTCAAAGTCATACTCTATCCCCTCTCTGAAGTGTTATCGTTCTCCCTCAAATTCCCTTTTCATCACAAAATCAAAATATATGCCTAGAATCAAATTTCCTCTCGCAAATACTCAAATATTTCGCTTTCTTTCCTCAATCCTTGAATTGAATTCATTGTCTCTAAGAAATTCTCTCTCAAATTCTGAACAACAAACTATAACCAGAACGAAGGAAGGGTACAAGAAATCAAGAATTTCGGAAAATCG...

CDS

2 records

下载 CDS FASTA

LOC131007019
ATGGATAAATCTTGGATTAACATAAAAGATCGAGTAAATGATGATGCTTTTAAGCGTGGTTTACACAGCTTCCTTGAATTTGCATACATAAGCAAGTCGGCAGAGGCTAAGATTAAGTGTCCGTGCACTAAATGTAGAAATTCTAGATTACAGTCCAGAGATGAGGTCTACAGTCATGTTATGGTAAATGGTTTTCTTGAAGGATACACCAACTGGGTGTATCAAGGCGAAGAACCATATTACCTTAAAAATAAACATGT...

LOC131007019
ATGGGACATCGTCGTTTTCTTCCAAGTGGGCATAAGTATCGTACAGATAGGATTCATTTTGATGGGTCTATCGAGAAAGCTCCAAAACCTTCACGATTGTCAGGTTCAGAGATATTAGAGCAGGTGGATGGTATAGTAAATAACTTTGGGAAGTATACTGACAAAAACGTGAGAAGAAAAAGAGGACGGAATGAAGGGTTTCATGCTCATACTTCAACATGCAGATACAATTGGAAGAAGTTGAGTATATTCTTTCAATT...

Protein

2 records

下载 Protein FASTA

XP_057790148.1
MDKSWINIKDRVNDDAFKRGLHSFLEFAYISKSAEAKIKCPCTKCRNSRLQSRDEVYSHVMVNGFLEGYTNWVYQGEEPYYLKNKHVDASQERNDHHDMGGLIHDALRTSFHHGEFHENTSSFGTNSEDPIGETLHNKNHFDENTEKFFKLLKHAECELFPGCKTFTTLSFIVRLLHVKSLCRWSNNSFTMLMEVLSEAFQQNDMFPKSYREAWNIIKELGLEYKKFHACPNDCMLYWKDTENDEACKHCKTSRYKPFEV...

XP_057790149.1
MGHRRFLPSGHKYRTDRIHFDGSIEKAPKPSRLSGSEILEQVDGIVNNFGKYTDKNVRRKRGRNEGFHAHTSTCRYNWKKLSIFFQLPYWKDNLVPHNLDIMHIEKNVLENILWTLLGVAAKTKDNLKSRLDLQELNIRKSLHPQREGDKIYLPSACFTLSKKEKDVFLQVLKNVKVPDGYASNISKCVNIAERNIFGLKSHDCHILMQQLLPVALRRLVPKHVCKAIINLCEVFKQLYSKVHTEADFEDLEERVALVLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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