当前解析结果
SmilChr01G001087| 统一新 Gene ID | SmilChr01G001087 |
|---|---|
| 名称 | SmilChr01G001087 |
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22311098 - 22313932 / - |
| NCBI Gene ID | LOC130999654 |
|---|---|
| GeneID | 130999654 |
| locus_tag | - |
| NCBI Name | LOC130999654 |
| 原始查询 | SmilChr01G001087 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 产物 | putative inactive disease susceptibility protein LOV1 |
| Arabidopsis | AT3G07040 (RPM1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:819889] identity=28.9; qcov=0.798; evalue=4.56e-71; confidence=low |
| Rice | Os12g0500500- identity=32.4; qcov=0.772; evalue=8.71e-81; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999654 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781271.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781271.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781271.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781271.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22311226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C16 |
Chr1:22311347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr1:22311487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:22311936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:22312637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:22312749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr1:22312829 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B99 |
Chr1:22312829 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B99 |
Chr1:22312855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr1:22313243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:22313472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:22313690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781271.1PF00931
NB-ARC 233-395 aa
PF23559
WHD_DRP 469-541 aa
PF23598
LRR_14 615-923 aa
PF13855
LRR_8 640-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781271.1 |
Pfam | PF00931 |
NB-ARC | Domain | 233 | 395 | 6.2e-34 | 117.8 | NB-ARC domain |
XP_057781271.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 469 | 541 | 1.4e-17 | 64.2 | Disease resistance protein Winged helix domain |
XP_057781271.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 615 | 923 | 1.5e-44 | 152.9 | Leucine-rich repeat region |
XP_057781271.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 640 | 694 | 4e-07 | 30.4 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。