Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001107`

染色体: Chr01 坐标: 22682159-22689602 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001107`
名称	SmilChr01G001107
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	22682159 - 22689602 / `+`

ID 对照

NCBI Gene ID	`LOC131007041`
GeneID	`131007041`
locus_tag	`-`
NCBI Name	`LOC131007041`
原始查询	`SmilChr01G001107`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.2; qcov=1.07; evalue=3.38e-78; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=27.3; qcov=0.932; evalue=7.15e-68; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131007041

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790171.1`
2	Cytosol	细胞质基质	0.20000	`XP_057790171.1`
3	Nucleus	细胞核	0.00000	`XP_057790171.1`
4	Chromosome	染色体	0.00000	`XP_057790171.1`
5	Centromere	着丝粒	0.00000	`XP_057790171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:22682445`	`GC`	`G`	1bp_deletion	frameshift_variant	19	A14,A19,B101,B114,B131,B139,B28,B37,B51,B56,B96,C20,C44,C53,C55,C57,C70,C71,C87
`Chr1:22682569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:22682613`	`A`	`AG`	1bp_insertion	frameshift_variant	10	A16,A2,B43,B55,B57,B61,B96,C19,C41,C55
`Chr1:22682614`	`A`	`AAG`	2bp_insertion	frameshift_variant	10	A16,A2,B43,B55,B57,B61,B96,C19,C41,C55
`Chr1:22682620`	`C`	`CCA`	2bp_insertion	frameshift_variant	55	A14,A15,A23,B118,B121,B122,B125,B126,B129,B131,B133,B15,B20,B23,B24,B36,B37,B38,B39,B42,B48,B51,B53,B54,B56,B64,B67,B69,B70,B76,B78,B87,B9,B94,B97,C12,C13,C14,C28,C29,C3,C32,C34,C52,C55,C57,C58,C6,C68,C77,C81,C82,C85,C87,D8
`Chr1:22682657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:22682706`	`G`	`GAA`	2bp_insertion	frameshift_variant	68	A1,A15,A2,B102,B104,B108,B11,B115,B12,B123,B124,B128,B13,B130,B134,B14,B15,B18,B2,B22,B23,B25,B29,B3,B33,B38,B39,B40,B41,B42,B43,B48,B55,B57,B58,B65,B68,B73,B79,B80,B82,B84,B90,C13,C18,C19,C23,C3,C31,C32,C37,C41,C45,C49,C5,C50,C51,C53,C54,C75,C76,C78,C83,C86,D10,D11,D6,D9
`Chr1:22682707`	`TGC`	`T`	2bp_deletion	frameshift_variant	67	A1,A15,A2,B102,B104,B108,B11,B115,B12,B123,B124,B128,B13,B130,B134,B14,B15,B18,B2,B22,B23,B25,B29,B3,B33,B38,B39,B40,B41,B42,B43,B48,B55,B57,B58,B65,B68,B73,B79,B80,B82,B84,B90,C13,C18,C19,C23,C3,C31,C32,C37,C41,C45,C49,C5,C51,C53,C54,C75,C76,C78,C83,C86,D10,D11,D6,D9
`Chr1:22682772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr1:22682785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,C63,C72
`Chr1:22682873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:22683082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790171.1

868 aa

434

868

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 179-326 aa PF23559 WHD_DRP 408-483 aa PF23598 LRR_14 544-842 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790171.1`	Pfam	`PF00931`	NB-ARC	Domain	179	326	7.7e-31	107.7	NB-ARC domain
`XP_057790171.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	483	7.6e-07	29.8	Disease resistance protein Winged helix domain
`XP_057790171.1`	Pfam	`PF23598`	LRR_14	Repeat	544	842	6.1e-29	101.6	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934188.1
TTGGATACAGCTAGCATAGAATATTAAATTAAATTTAAGAAAAGGATTGGTGCATTTTAATTATAAATTTAAGAAAAGGATTGGTCCATTTTGTTGTTGACCATCTTCCTTATAATTAATTCCAAAACGAGAGAGAAAAGGGGAAGATGAAGTAGAGCTAAAGAGAGTTAGAAGAAGTGGATATGGCGGAGGCAATTGTATTATCGGCGGTGGAAAAGCTGGAGAATCTGCTGGTGATTAAGGAGGGTGTTTCCAAACAT...

CDS

1 records

下载 CDS FASTA

LOC131007041
ATGGCGGAGGCAATTGTATTATCGGCGGTGGAAAAGCTGGAGAATCTGCTGGTGATTAAGGAGGGTGTTTCCAAACATCGAAAAACAGCAAAGGAGAAGGAGGAGCTAGTAGTAGTAGTAGTGGAAGGGCTGAGAGATGATCTCAGAGGGATGCTGTCTCTCTTCACTAACAACAGCACCAAGGAATCTGGAGATTACATATCTCGAGTCACGGAGATTGCTCACGACGTGGACGTCGCCATTGATAACTACATCCTGCA...

Protein

1 records

下载 Protein FASTA

XP_057790171.1
MAEAIVLSAVEKLENLLVIKEGVSKHRKTAKEKEELVVVVVEGLRDDLRGMLSLFTNNSTKESGDYISRVTEIAHDVDVAIDNYILQDTQPKSPILRFFKFSSGHAFSREIHGMRHRLQAVWCDFSRSEEAGPTTRSTSRRIPPAVEVEVGVVEGMKEDVELVLRKAIFLEESAQGLATSCIVGMGGVGKTTLAQMLYTHERVASEFEIRAWVYVSTEFTSKQVLKELILQFGVNYDEVDADEPSRLRDIVYQHLHTTRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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